Streptomyces microflavus: SFUL_5350
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Entry
SFUL_5350 CDS
T02650
Name
(GenBank) DNLJ2 DNA ligase 2
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfi
Streptomyces microflavus
Pathway
sfi03030
DNA replication
sfi03410
Base excision repair
sfi03420
Nucleotide excision repair
sfi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFUL_5350
03410 Base excision repair
SFUL_5350
03420 Nucleotide excision repair
SFUL_5350
03430 Mismatch repair
SFUL_5350
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfi03032
]
SFUL_5350
03400 DNA repair and recombination proteins [BR:
sfi03400
]
SFUL_5350
Enzymes [BR:
sfi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFUL_5350
DNA replication proteins [BR:
sfi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFUL_5350
DNA repair and recombination proteins [BR:
sfi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFUL_5350
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFUL_5350
MMR (mismatch excision repair)
DNA ligase
SFUL_5350
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFUL_5350
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
AGK80243
UniProt:
N0D2Y2
LinkDB
All DBs
Position
5932309..5934573
Genome browser
AA seq
754 aa
AA seq
DB search
MTGTTGKREDGTMAGEQRVEQESSVPADVREEHALLAEKVEEHRFRYYVKDQPVVSDADF
DRQMRALEALEEKHPALRTPDSPTQKVAGPYRTEFTSVEHRERMLSLDNAFDDEELAAWA
ERVAKDVGTPDHHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIP
HRLKGDDIPALVEIRGEVFFPMEAFEELNARLVAADDKPFANPRNAAAGSLRQKDPKVTA
TRPLHMVVHGIGAHEGLTIDRLSQAYELLHSWGLPTAQHNKVVDSLAGVREFIAYFGEHR
HSVEHEIDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLVNIRVGVGRTGRV
TPYAQVEPVEVAGSEVEFATLHNQNVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDG
TEKAFEMPAHCPECGTELRPMKEADIDLRCPNARSCPAQLRERVFYLAGRKSLDIDHFGY
VAAAALTRPLEPAEPALRDEGDLFDLTIEQLLPIRAYVLDQDSGLPKRDPKTGEEKIATV
FANQQGEPKKNAVAMLEGIAAAKEAPLARILTGLSIRHVGPVAAQELARQFRSIDRIDEA
TEQELADADGVGPIIAASVKQWFAEDWHREILRKWREAGVRMADEGADEEQGPRPLEGLT
VVVTGTLTAYTRDGAKEALQSLGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLDE
AGFAVLLEQGPDAAREAALPVPEPAAPEPEAAPE
NT seq
2265 nt
NT seq
+upstream
nt +downstream
nt
gtgacggggacgacgggcaaacgggaggacgggacgatggccggcgaacagcgggtggag
caggagagctcggttccggcggacgtgcgggaggagcacgcgctgctggccgagaaggtc
gaggagcaccgcttccggtattacgtgaaggaccagccggtcgtcagcgacgccgacttc
gaccggcagatgcgtgcgctggaggcactggaggagaagcacccggcgttgcgcaccccg
gactccccgacccagaaggtcgcggggccctaccgcacggagttcacctccgtcgagcac
cgcgagcgcatgctctccctggacaacgccttcgacgacgaggagctggcggcctgggcc
gagcgcgtcgccaaggacgtcggcacgcccgaccaccacttcctctgcgagctcaaggtg
gacggcctcgccgtcaacctcacctacgagcacgggcggctgacccgcgcggcgacccgg
ggcgacggccgcaccggcgaggacatcacccccaacgtccggacgatcgcggagatcccg
caccgcctgaagggcgacgacatccccgcgctggtcgagatccggggcgaggtcttcttc
cccatggaggccttcgaggagctgaacgcccggctggtggccgccgacgacaagccgttc
gccaacccgcgcaacgcggcggccggttcgctgcgccagaaggacccgaaggtcaccgcc
acccgcccgctccacatggtggtgcacggcatcggcgcccacgagggcctcaccatcgac
cgcctctcccaggcctacgagctcctccactcctggggcctgcccaccgcccagcacaac
aaggtcgtcgactccctcgcaggcgtacgggagttcatcgcgtacttcggtgagcaccgg
cactccgtggagcacgagatcgacggggtcgtcgtcaagctcgacgagatcccgctccag
ggacggctgggctccacctcgcgcgccccgcgctgggccatcgcctggaagtacgccccc
gaagaggtcaacaccaagctggtcaacatccgcgtcggcgtcggccgcaccggccgcgtc
acgccgtacgcccaggtcgagccggtcgaagtggccggttccgaggtcgagttcgccacc
ctccacaaccagaacgtggtcaaggccaagggcgtcctcatcggtgacaccgtggtcatc
cgcaaggcgggcgacgtcatcccggagatcctcggccccgtcgtcgacctgcgcgacggc
accgagaaggcgttcgagatgccggcccactgccccgagtgcggtacggagctgcgcccg
atgaaggaggccgacatcgacctccgctgccccaacgcccgtagctgccccgcccagttg
cgcgagcgggtcttctacctcgccgggcgcaagagcctggacatcgaccacttcggctat
gtggccgccgccgccctcacccggcccctggagcccgccgagcccgccctgcgggacgag
ggcgacctgttcgacctcaccatcgagcagctgctgccgatccgggcgtacgtcctggac
caggacagcggtctgcccaagcgtgacccgaagaccggcgaggagaagatcgcgacggtc
ttcgccaaccagcagggcgagccgaagaagaacgcggtggccatgctggagggcatcgcc
gccgcgaaggaggcgccgctggcccggatcctcaccgggctctccatccggcacgtcggt
ccggtcgccgcccaggagctggcccgtcagttccgctccatcgaccgcatcgacgaggcc
accgagcaggagctggccgacgcggacggcgtcggccccatcatcgcggcctccgtcaag
cagtggttcgccgaggactggcaccgcgagatcctgcgcaagtggcgcgaggccggggtc
cggatggccgacgaaggagccgacgaggagcagggcccccgccccctcgaagggctcacc
gtcgtcgtcaccggcaccctcaccgcctacaccagggacggtgcgaaggaggcgctccag
agcctcggggcgaaggtcaccggatcggtgtcgaagaagaccgcgttcgtggtcgtcggc
gacaaccccggctccaagtacgacaaggccatgcagctgaaggtccccgtgctggacgag
gccgggttcgccgtcctcctcgaacagggccccgacgccgcccgggaggcggccctgccg
gtgccggagccggcggcacccgagccggaagcagccccggagtag
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