Serratia ficaria: SAMEA4384070_3572
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Entry
SAMEA4384070_3572 CDS
T06444
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfj
Serratia ficaria
Pathway
sfj03030
DNA replication
sfj03410
Base excision repair
sfj03420
Nucleotide excision repair
sfj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SAMEA4384070_3572 (ligA)
03410 Base excision repair
SAMEA4384070_3572 (ligA)
03420 Nucleotide excision repair
SAMEA4384070_3572 (ligA)
03430 Mismatch repair
SAMEA4384070_3572 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfj03032
]
SAMEA4384070_3572 (ligA)
03400 DNA repair and recombination proteins [BR:
sfj03400
]
SAMEA4384070_3572 (ligA)
Enzymes [BR:
sfj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SAMEA4384070_3572 (ligA)
DNA replication proteins [BR:
sfj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SAMEA4384070_3572 (ligA)
DNA repair and recombination proteins [BR:
sfj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SAMEA4384070_3572 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SAMEA4384070_3572 (ligA)
MMR (mismatch excision repair)
DNA ligase
SAMEA4384070_3572 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SAMEA4384070_3572 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
SNW03827
UniProt:
A0A240C759
LinkDB
All DBs
Position
1:complement(3782551..3784530)
Genome browser
AA seq
659 aa
AA seq
DB search
MRHHEYQYHVLDAPEVPDAEYDRLMRELRELENAHPALITADSPTQRVGAAPLAAFDQVR
HEVPMLSLDNVFDEESFLAFYKRVQDRLKSSEPLTFCCELKLDGLAVSLLYEDGELVRAA
TRGDGTTGENITSNVRTIRAIPLRLSGDNIPRRLEVRGEVFMPQAGFEQMNEEARRKDGK
IFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGLLEGGELPRSHFARLMQFRAWGLPVS
DRAQCCTGSDEVLAFYRQVEQDRAQLGFDIDGVVVKIDDIDLQETLGFVARAPRWATAFK
FPAQEQITLVREVEFQVGRTGAITPVARLEPVLVAGVTVSNATLHNADEIERLGLRIGDT
VIVRRAGDVIPQVVGVLEDRRPQDAREVVFPQHCPVCGSDVERVEGEAVARCTGGLICAA
QRKEALKHFVSRRALDVEGMGDKIIEQLVEKEYVKNPADLFRLSAGILTGLDRMGPKSAQ
NLVNALEKSKQTTFARFLYALGIREVGESTAANLAAHFGSLEKLFAADIEALKEVPDVGE
VVAKHTRHFLDEALNQKVIDELVGAEIGISWPAPVAVAAEEIDSPFAGKTVVLTGSLSQL
SRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEVIDEAEMIRLLGA
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
ttgcgccatcacgaataccagtatcacgtgctcgacgcgccggaagtgccggatgcggaa
tacgaccgcctgatgcgcgaactgcgcgagctggaaaacgcccatccggcgctgatcacc
gccgattcgccgacccagcgggtgggcgcggcgccgctggcggcctttgatcaggtgcgc
catgaggtaccgatgctgtcgctggacaacgtgttcgatgaagaaagcttccttgcgttc
tacaagcgcgtgcaggatcggctgaaaagcagcgagccgctgactttctgctgcgagctg
aagctggacggcctggcggtcagcctgttgtacgaagacggcgaactggtgcgcgcggct
acccgcggcgacggcaccaccggcgagaatattacctccaacgtgcgcaccatccgcgcc
atcccgctgcggctgagcggcgacaacattccgcgtcggctggaagtgcgcggcgaagtg
ttcatgccgcaggccggctttgagcagatgaacgaagaggcgcggcgcaaggacggcaag
attttcgccaacccgcgcaacgccgccgccggctcgctgcgccagctcgatccgcgcatc
accgccaagcgcccgctgaccttcttctgctacggcgtcggcctgctggaaggcggcgag
ctgccgcgcagccacttcgcgcggctgatgcagttccgggcctggggattgccggtcagc
gatcgcgcgcaatgctgcaccggcagcgatgaggtgctggcgttttaccgccaggtggag
caggaccgtgcgcagctcggtttcgacatcgacggcgtggtggtgaaaatcgacgatatc
gatctgcaggaaaccctcggtttcgtggcgcgcgcgccgcgctgggcgacggcgttcaaa
ttcccggcgcaggaacagattacgctggtgcgcgaagtcgaatttcaggtggggcgcacc
ggcgccatcaccccggtggcgcggctggagccggtgttggtggccggcgtcaccgtcagc
aacgccaccttgcacaacgccgatgagattgaacgcctgggcctgcgcattggcgatacg
gtgatcgtgcgccgcgccggcgacgtgatcccgcaggtggtgggggtgctggaagaccgc
cgcccgcaggacgcgcgcgaagtggtgttcccgcagcactgcccggtgtgcggctccgac
gtcgaacgggtggagggcgaagcggtggcgcgctgcaccggcgggctgatctgcgccgcg
cagcgtaaagaagcgctgaagcatttcgtttcccgccgggcgttggacgtcgaaggcatg
ggcgacaaaatcatcgaacagctggtggaaaaagaatacgtcaagaacccggccgatctg
ttccgcctgtccgccggcattctgaccgggctggatcgcatggggccgaaatcggcgcag
aatctggtcaacgcgctggagaaatccaagcagaccaccttcgcgcgtttcctgtatgcg
ctgggcattcgcgaggtcggcgaatcgaccgccgccaacctggctgcgcacttcggctcg
ctggagaagctgttcgccgccgatatcgaggcgctgaaagaagtgccggacgtcggtgaa
gtggtggcgaagcacacgcgtcatttcctcgacgaagcgcttaatcaaaaggttatcgat
gagctggtgggcgccgaaatcggcatcagctggccggcgccggtggcggtggcggcggaa
gagatcgacagcccgttcgccggcaaaaccgtggtgctgaccggttcgctcagccagctg
tcgcgcgacgaagccaaggatcgcctgacggcgctgggcgccaaggtcagcggcagcgtg
tcgaagaagaccgatctggtgatcgccggcgaagcggccggttccaaattggcgaaggcg
caggagctgggcatcgaagtgatcgacgaagcggaaatgatccgcctgttgggggcctga
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