KEGG   Streptomyces formicae: KY5_5652
Entry
KY5_5652          CDS       T05416                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sfk  Streptomyces formicae
Pathway
sfk03030  DNA replication
sfk03410  Base excision repair
sfk03420  Nucleotide excision repair
sfk03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sfk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    KY5_5652
   03410 Base excision repair
    KY5_5652
   03420 Nucleotide excision repair
    KY5_5652
   03430 Mismatch repair
    KY5_5652
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sfk03032]
    KY5_5652
   03400 DNA repair and recombination proteins [BR:sfk03400]
    KY5_5652
Enzymes [BR:sfk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     KY5_5652
DNA replication proteins [BR:sfk03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     KY5_5652
DNA repair and recombination proteins [BR:sfk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     KY5_5652
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     KY5_5652
   MMR (mismatch excision repair)
    DNA ligase
     KY5_5652
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      KY5_5652
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD PTCB-BRCT Nlig-Ia HHH_5 HHH
Other DBs
NCBI-ProteinID: ATL30670
UniProt: A0A291QFV7
LinkDB
Position
6528491..6530674
AA seq 727 aa
MAVEQQGSVPAEARDQHAQLAEQIEEHRFRYYVKDQPVVSDAEFDKLLRSLEALEEEYPE
LRTPDSPTQKVAGAYETEFTSVEHRERMLSLDNAFDDEELAAWADRVAKDVGSPGYHFLC
ELKVDGLAVNLTYEDGKLTRAATRGDGRTGEDITPNVRTIADIPDRLEGDRVPALVEIRG
EVFFPMEKFEELNARLVEAGDKPFANPRNAAAGSLRQKDPRITATRPLHMVVHGIGAREG
FDIDCLSHAYELLHEWGLPTAQHNKVVDDLQGVRDFIAYFGENRHSVAHEIDGVVVKLDE
IPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQDVVKKKGVFIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPECGT
PLRPMKEGDIDLRCPNAQTCPAQLRERLFYLAGRKSLDIENFGYVAAAALTRPLEPADPP
IRDEGDIFDLKIEELLPIKSYVLDQDSGLPKRDPKTGEEKVVTFFANQKGEAKKNSLAML
ENIAAAKDRPLARVLTGLSIRHVGPVAAEALAREFRSIDRIEQATEEELAVVEGVGGTIA
ASVKQWFAEEWHREILRKWRAAGVRMEEEASGEDEGPRPLEGLTVVVTGTLEHHTRDGAK
EALQSRGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLNEEGFAVLLEQGPDAAKE
VALPTEE
NT seq 2184 nt   +upstreamnt  +downstreamnt
gtggctgtcgaacagcaaggctctgtgcccgccgaggcacgggatcagcacgcccagctg
gccgaacagatcgaggagcaccgcttccggtactacgtgaaggaccaaccggtcgtcagc
gacgccgagttcgacaagctcctgcgttctctcgaagccctggaggaggagtatccggag
ctgcgcacgccggattcgcccacccagaaggtcgccggcgcgtacgagacggagttcacc
tcggtcgagcaccgcgagcggatgctctccctggacaacgccttcgacgacgaggagctt
gccgcctgggccgaccgcgtggccaaggacgtcggctcgccgggctaccacttcctgtgc
gagctgaaggtcgacggcctcgcggtcaacctcacctacgaggacggcaagctgacccgc
gccgcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtccgcacgatc
gccgacatccccgaccgcctcgaaggcgaccgcgtgcccgccctcgtcgagatccgcggc
gaggtcttcttcccgatggagaagttcgaggagctgaacgcccgcctggtggaggcgggc
gacaagcccttcgccaacccgcgcaacgcggcggcgggttcgctgcgccagaaggacccg
cgcatcacggccacgcgcccgctgcacatggtcgtgcacggcatcggcgcccgcgagggc
ttcgacatcgactgcctcagccacgcctacgagctgctccacgaatggggcctgcccacc
gcccagcacaacaaggtggtcgacgacctccagggcgtccgcgacttcatcgcgtacttc
ggggagaaccgccactccgtggcgcacgagatcgacggcgtcgtcgtcaagctcgacgag
atcccgctccagggccgcctcggctccacctcgcgcgccccgcgctgggccatcgcctgg
aagtacgcgcccgaggaggtcaacaccaagctcatcaacatccgcgtgggcgtcggccgc
accggccgcgtcacgccgtacgcccaggtggaacccgtcaccgtggcgggctccgaggtc
gagttcgcgaccctgcacaaccaggacgtggtgaagaagaagggcgtcttcatcggcgac
acggtcgtgctgcgcaaggcgggcgacgtcatcccggagatcctcggccccgtcgtggac
ctgcgggacggcagcgagcgggagttcgtgatgcccgccgagtgccccgagtgcggtacg
ccgctgcggcccatgaaggagggcgacatcgacctccgctgccccaacgcccagacgtgc
cccgcccagttgcgtgaacgtctcttctacctggcgggccgcaagagcctggacatcgag
aacttcgggtacgtcgcggcggccgcgctcaccaggcccctggagcccgccgatccgccg
atccgcgacgagggcgacatcttcgacctgaagatcgaggaactgctccccatcaagtcg
tacgtcctggaccaggattccggcctgcccaagcgcgacccgaagaccggcgaggagaag
gtcgtcaccttcttcgccaaccagaagggcgaggcgaagaagaactccctcgccatgctg
gagaacatcgcggcggccaaggaccggccgctcgcccgcgtcctcacgggcctctcgatc
cggcacgtgggaccggtggccgccgaggcgctcgcccgcgagttccggtccatcgaccgc
atcgagcaggcgacggaggaggagctggccgtggtggagggcgtcggcggcaccatcgcc
gcctccgtcaaacagtggttcgccgaggagtggcaccgcgagatcctgcgcaagtggcgg
gcggcgggcgtccgcatggaggaagaggcgagcggcgaggacgaggggccccgacccctc
gagggactcacggtcgtggtgaccggaacgctcgagcaccacacccgggatggcgcgaaa
gaggcgttgcagagccgtggcgccaaggtcaccggttccgtttcgaagaagaccgcgttc
gtggttgtcggggacaaccccggatcgaagtacgacaaggccatgcaactgaaggttccg
gttctcaacgaggaaggcttcgctgtcctgctcgaacagggaccggacgcggcgaaggaa
gtcgcgcttccgaccgaggagtag

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