Scleropages formosus (Asian bonytongue): 108918991
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Entry
108918991 CDS
T04919
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03440
Homologous recombination
sfm03460
Fanconi anemia pathway
sfm04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108918991 (brca1)
09124 Replication and repair
03440 Homologous recombination
108918991 (brca1)
03460 Fanconi anemia pathway
108918991 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
sfm01009
]
108918991 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
sfm04121
]
108918991 (brca1)
03036 Chromosome and associated proteins [BR:
sfm03036
]
108918991 (brca1)
03400 DNA repair and recombination proteins [BR:
sfm03400
]
108918991 (brca1)
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108918991 (brca1)
Protein phosphatases and associated proteins [BR:
sfm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108918991 (brca1)
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
108918991 (brca1)
Multi subunit type E3
BRCC complex
108918991 (brca1)
Chromosome and associated proteins [BR:
sfm03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108918991 (brca1)
DNA repair and recombination proteins [BR:
sfm03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108918991 (brca1)
BRCA1-A complex
108918991 (brca1)
BRCA1-B complex
108918991 (brca1)
BRCA1-C complex
108918991 (brca1)
BRCA complex
108918991 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
108918991 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-C3HC4
BRCT_2
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
RING_XB3-XBAT31
zf-Nse
zf-RING_5
PTCB-BRCT
zf-MIZ
zf-ANAPC11
zf-RING_4
U-box
zf-RING_6
BRCT_assoc
Motif
Other DBs
NCBI-GeneID:
108918991
NCBI-ProteinID:
XP_018582189
UniProt:
A0A8C9RL02
LinkDB
All DBs
Position
20:complement(577556..600329)
Genome browser
AA seq
1554 aa
AA seq
DB search
MYGLDEDMKGPKVEDVKWGICVIWENLQCPICLDLMSTPVSTKCDHQFCRFCILKLLDST
KKREANCPICKAKVTKRSLQESPGFQRLVEGLKNMVQAFEQDTCMSYSNEAPHTLELLGV
PKAGSETPFCEEASCSDGHRKSSTDNSQSRTPGDAAASASSSVEAKNGFARLMGLEDSST
FISEEGLPSGAHDIPKTSGELDIRSTCDIFVPNTDTLGLKLEKPSIEGKKSCEMGVKIVL
PHEESFQHTQGCEDMEICSEENQTDSKRDKILNNSEKKSLEKVSKWLLNISPNDRDKGDP
NLDGICHEDSHDCTSRGERSSFTAKGNKDEVQSRNPKQLNHRLPLEEKVFGVTYKRHRKS
SGAQISSALPNIRAAVEQPTCGSAEKVQSKTVKKMRIKKLTPTDFIKRPYTGVEGHSPVK
DELEGGREVCALKGQSADAGAKTRIDERRETGTDGRILKEKKLLEEEGIVIDGPVGQGTT
RNNLQNEFQEFSDGLIPKLTETENGKANKCKQKRNRSNRSAKSCAKKKLFRKPKALDLIC
GGLSSSDSAPSPSERPSFHEVQIESYPSSNHRGTPDLKGFQQSGRLQPFTKNIQESTRKD
HQVDSRNTVLPDSKNGQVQCSAEHEDAERTVMSSSGGKKNVMERPVVQNCCIAFEDMIEI
MKDDTSVHTNSEEQCQKQPGTSEHGSHLSFVPNTETLHVSPQHSLIRGVAPVSQIVAEDL
PEANFEIPLPAGNVASEPILTETEDCRNDGELDTELLLKTFKSTKRRSFLIGSPSSKRSN
RSSFAADKCNLEEEQKNDVCDKKGPEKEPETLYVEDSVELVQQGRETLSFGVVNHLASEE
TKNKNLHYSPKLSCVGSTNPSVCDVSAQKSCRRQRRKFRNQRRTTSKPLETEELSSFDAG
KSHNYPSIRSGSSSETDRIKELARARNGPSSRHSVPSEEVGSELLFPTSTASGEEPQDPA
NHITENLRLGSSDPNRGLSEASMSANEEHGAYSGQHLGEPPTCRVNDFQESSMTPDGLLP
PSVEGTFGKERRRPRRLESSESECSDEEDQLPSFAEMLEPGKSHVAVADKEVLFNSRNLP
LLPQGCPGKFLCGEAGRCPNHGVSSVSECIPASQMSVDLFGTPEECDADPCDTGLSGQCS
QFSSEIIATQQKLAMQEELHRLEKMMALVTEALHQKGGTPEPPTPHSAEPADLSLFTEDS
DVPTPVPCPDQNTERSSRPKRFPAPALVPPPRRGAPGCRNDAISPLPGLVIAEAIQDESP
RSSAGRRCSTRGRSMKGAKAIEGTKETAAAVTLDRREITLSNPTTEAPLRVMPLAADLEL
GSSVFPALQNRSPVPTDVPAHPRSGRGKMMIVASGLSTSELSVVKKFAKKTGGSMCTQMT
PETTHVIMRTDKELVCERTLKYFLGIAGRKWVVSFHWIAESFRQGKVLDEAPFEVRGDMA
TGRSHRGPEKARNTNEQKLLMRGFEICFQGSFMDMTTDQLEWMAELCGAKVVKDPLLFTS
RRKSSRQLVVVQPSPEDTQTTYRALQKRATVVSRGWLLDSVATYTLLSPDGYKP
NT seq
4665 nt
NT seq
+upstream
nt +downstream
nt
atgtacggcctggatgaagacatgaagggaccgaaggtggaggatgtcaagtggggcatt
tgtgtcatctgggagaacctgcagtgccccatatgtttggatttgatgagtactcccgtc
tcgaccaaatgtgaccatcagttttgtagattttgcatcctgaagttgctggacagtacc
aagaagcgggaggccaactgtccgatttgtaaagcaaaggtcacaaaaagaagtttacag
gagagccctgggttccagagacttgtagagggattaaagaacatggtccaggcttttgaa
caagatacttgcatgagctactcaaatgaagcaccccatactctggagctacttggtgtt
ccaaaagcagggtcagaaaccccattctgtgaagaagcctcctgtagtgatgggcaccgc
aaaagcagtactgacaacagccaatcccgaacacctggtgatgctgcagcatccgcgtca
tcctccgttgaagccaagaatggctttgcaagacttatgggtcttgaagactcaagcact
ttcatctcagaagagggcttgccaagcggagcccatgacatacccaaaacctcaggagaa
cttgatattaggagcacatgtgatatttttgtccctaatacagataccctgggcctaaaa
ttagaaaaaccttccatcgagggaaaaaagtcctgtgaaatgggtgtgaaaatagtgctc
cctcatgaagaatcttttcaacatacccagggctgtgaagatatggaaatttgcagtgag
gagaatcaaacagattcaaaacgagacaaaattttaaataatagcgagaagaaaagcctg
gaaaaagtgtccaagtggctattaaatatatctccaaatgaccgagataaaggtgaccca
aaccttgatggaatttgccatgaggactctcatgactgcacatctagaggagaaaggtct
tcattcactgcaaagggcaacaaagatgaggtgcaatcaaggaatcctaagcagttgaat
cacaggctgcctttggaagaaaaagtgtttggagtgacatacaaaaggcatcgtaagtct
agtggagctcaaatcagtagcgcccttccaaatattagagcagctgtagagcagcccaca
tgtggttcagctgagaaagtccaaagtaagactgtgaagaaaatgaggattaagaagcta
actcctactgactttattaagagaccatatactggggtggagggtcacagccctgtgaag
gatgagttggagggtggaagagaagtgtgtgctctcaaggggcagtctgctgatgcagga
gcaaagacacgtattgatgagagaagagaaacaggcacagatgggagaattctgaaggag
aagaaattgttggaagaggaaggaattgtgatagatggtcctgttggtcaaggaaccaca
aggaataatctgcagaatgaatttcaggagttcagtgacggtttgataccaaagctgaca
gaaacagaaaatggcaaagcaaacaaatgcaagcaaaagaggaaccgaagtaataggagc
gcaaaaagttgtgctaaaaagaagttatttaggaaaccaaaggcactggacctgatctgt
ggagggcttagctcctcggattctgcaccaagtccttctgaaagaccttcatttcatgaa
gtccagattgagagttaccccagtagtaaccacagaggaacccctgatctaaagggattc
caacagagcggaaggctgcagcctttcacaaagaacattcaagaaagcacaaggaaggac
caccaagtagattctagaaatactgttttgcctgattccaaaaatgggcaggtgcagtgt
tcagcagaacatgaagatgctgaaaggactgttatgagcagtagtggtggaaagaaaaat
gtgatggaaaggcctgttgtgcagaattgctgtattgcttttgaggacatgatagaaatt
atgaaagatgacaccagtgttcatacaaattctgaggagcaatgtcaaaagcaacctggc
acttctgaacacggttcacacctgtcttttgttcccaatacagaaacccttcacgtttca
cctcagcattcactaattaggggtgtggccccagtgtcccagatcgtggcagaagacttg
ccagaagccaactttgaaattcctttgcctgctgggaatgtagcaagtgagccaatcctc
actgagacagaagactgcaggaatgatggtgaactggacacggaactcttgctaaagacc
tttaaatctactaagaggagatcctttcttataggtagtcctagcagcaagcgttccaac
agaagttcatttgcggctgacaagtgcaacctggaagaagagcaaaagaatgacgtctgt
gacaaaaaaggtccagaaaaggaacctgagaccctatatgtggaagattctgtggaattg
gtgcaacaaggaagagaaacattgtcttttggagtggtgaatcatttagcttccgaggag
actaaaaacaaaaatttgcactacagtcctaaattgtcatgcgtgggttcaactaaccct
tcagtttgtgacgtatcagctcaaaagagctgcaggcgccaaagaaggaaatttagaaac
cagcgtagaaccacttccaaacctctggaaactgaggagctctcaagttttgatgctggg
aaaagtcataattatcccagcatacgttctggtagttctagtgagaccgatagaatcaaa
gagctggcaagagcaagaaacggtccgagctctaggcattcagtgcccagtgaagaagtg
ggttctgagcttctgttccctacatccactgcctctggagaggagccacaggatcctgct
aaccacatcacagagaatctgcgtttaggatcatcagacccaaatcgaggtctgtctgaa
gcctctatgtcagctaatgaagaacatggagcttacagtggccaacatcttggagagcca
cccacatgcagagtaaacgactttcaggagtcctcaatgactccagatggtcttctgcct
cccagtgtagaaggtacctttggtaaggagaggaggaggcctcggagacttgagtcctct
gagtctgagtgcagtgatgaggaagatcaacttccctcttttgctgagatgcttgaacct
ggcaaatcccatgtggcagtcgcagacaaagaagttctcttcaactcaagaaatctccca
ctcctaccccagggatgtcctgggaaatttctctgtggagaggccggtagatgccccaac
catggagtgtcgtcggtttcggagtgcattcctgccagtcagatgtctgttgatctcttc
ggcaccccagaagagtgtgatgctgatccatgtgacactggtttatctgggcagtgctct
cagttttcctctgaaattattgccactcagcaaaagctggcgatgcaggaggagctacac
cggctggagaagatgatggctctggtcacagaagctctccatcagaaggggggcaccccc
gaaccacccacaccgcattctgcagagccagcagacctttcactgtttacagaagattct
gatgtccctacaccggtgccctgtcccgatcagaacacagagagatcctctagacccaag
cgctttcccgcgcctgctctagtgcctccccccaggagaggagccccaggctgcaggaat
gatgccatctcacccttgccgggccttgtaatcgcggaggctatccaggacgagagccct
cgaagctcagcagggcggcgctgtagcacaagaggcagaagcatgaaaggcgctaaagcc
atagaggggaccaaagagaccgcagcggcagtgacactggacagaagagagatcactctc
tcaaatcccacaactgaagctccactgagggtcatgccactggcagcagacttggagctg
ggatccagcgtctttccagcactacaaaacaggagccctgtccctacagatgtgccagcg
cacccacggagcggacgtggaaagatgatgattgtggcgtcaggcctgagcacatcagag
ctgtcagtggtgaagaaatttgccaagaagacagggggcagcatgtgtacgcaaatgacc
cccgagaccacccatgtcatcatgaggacagacaaggagcttgtgtgtgagcggacgctg
aagtactttttaggcattgccgggcgcaagtgggtggtgagcttccactggattgcagag
agcttcagacaaggaaaagtcctggatgaagcgccgtttgaagtccgaggcgacatggca
accgggaggagtcaccgaggacccgaaaaagcccgtaacaccaacgagcagaagctgctc
atgaggggctttgagatctgcttccaaggctccttcatggatatgaccacagatcagctg
gagtggatggcagagctatgtggtgcgaaggtggtgaaagatccgctcctcttcacctcg
agacgcaaatccagtcggcagctggtggtggtgcagcctagtcctgaggacacgcagacc
acctacagagctctccagaagagggcgacagtggtgtcccgagggtggctgctggacagc
gtggccacttacaccctcctcagccctgatggctacaaaccctag
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integrated database retrieval system
