Scleropages formosus (Asian bonytongue): 108923254
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Entry
108923254 CDS
T04919
Symbol
tardbp
Name
(RefSeq) TAR DNA-binding protein 43 isoform X1
KO
K23600
TAR DNA-binding protein 43
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108923254 (tardbp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sfm03019
]
108923254 (tardbp)
Messenger RNA biogenesis [BR:
sfm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108923254 (tardbp)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
TDP-43_C
TDP43_N
RRM_1
RRM_7
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
108923254
NCBI-ProteinID:
XP_029105635
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Position
2:41247970..41252957
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AA seq
424 aa
AA seq
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MGEMYIRVAEDENEEPMEIPSEDDGTVLLSSVAAQFPGACGLRYRSPVSQCMRGVRLVEG
VLHAPESNWGNLVYVVNYPKDNKRKMEEMDAASAVKIKRGIQKTSDLIVLGLPWKTSEQD
LKDYFGTFGEVIMVQVKRDPKSGNSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPN
SKPCPVARWGLCALTQPLSPSQQGPDEPLRSRKVFVGRCTEDMTAEDLREFFMQYGEVTD
VFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGVSVHISNAEPKHGNSRQMMERGRFGGF
GGHGFSRGGMGNSGMGGGGSAGVNLGALSLNPAMMAAAQAALQSSWGVMGMLASQQGQTG
ASGGGASAGQGSGPSREQGQAFGSAAGSAGLAWGAASNAAGGASGGFSSSFGSSLDTKSS
GWGM
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagatgtacattcgcgtggcggaggacgagaacgaggagcccatggagatcccg
tccgaggacgacggcacggtgctgctgtccagcgtggccgcgcagttcccgggcgcgtgc
ggcctgcgctaccgcagccccgtgtcgcagtgcatgcgcggagtgcgcctcgtggagggc
gttctgcacgcgcccgagagcaactggggtaacctggtctacgtggtgaactacccgaaa
gataataaaaggaagatggaggagatggatgcggcctcagcagtgaagataaagcgtggc
attcagaagacgtcggacctcatagtgctcgggctgccatggaagacctctgagcaggat
ctgaaagattactttggcacattcggggaagtgatcatggtgcaggtgaaaagagatccc
aaatcggggaactcgaagggttttggttttgtgcgcttcgccgattacgagacacaggtg
aaagttatgtcccagcgacacatgatcgacggccggtggtgtgactgcaagctacccaac
tccaagccgtgtccagtggctcgctgggggctgtgtgcactaacgcagcccctttccccg
agccagcagggcccggatgagcctctgcgcagccggaaggtgtttgttggccgctgcacc
gaggacatgacggccgaggacctgcgtgagttcttcatgcagtatggcgaggtcacggac
gttttcatccccaagccattccgtgcatttgcctttgtcaccttcgctgacgaccaggtg
gcccagtcgttgtgcggagaggacctgatcatcaagggcgtcagcgtgcacatctccaac
gcagagcctaagcacggcaatagtaggcaaatgatggaacggggccgcttcggggggttc
gggggccacggcttcagtcgtggcggcatggggaacagcgggatggggggaggcggtagc
gccggtgtcaacttgggggcgctgagcctgaacccagccatgatggcagcagcgcaggcg
gcgctacagagcagctggggagtgatgggcatgctggccagccagcaggggcagacaggt
gcctcggggggcggagcctcggcaggccagggctccggcccttcccgcgagcagggccaa
gccttcggctcagctgccggctcggccgggttggcctggggggcagcctccaatgcagcc
ggcggcgccagcggagggttcagctccagcttcggctccagcttggacaccaagtcatca
gggtggggcatgtag
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