Scleropages formosus (Asian bonytongue): 108934700
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Entry
108934700 CDS
T04919
Name
(RefSeq) TNF receptor-associated factor 6-like isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sfm
Scleropages formosus (Asian bonytongue)
Pathway
sfm04010
MAPK signaling pathway
sfm04120
Ubiquitin mediated proteolysis
sfm04140
Autophagy - animal
sfm04144
Endocytosis
sfm04620
Toll-like receptor signaling pathway
sfm04621
NOD-like receptor signaling pathway
sfm04622
RIG-I-like receptor signaling pathway
sfm05132
Salmonella infection
sfm05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sfm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108934700
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
108934700
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108934700
04140 Autophagy - animal
108934700
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
108934700
04621 NOD-like receptor signaling pathway
108934700
04622 RIG-I-like receptor signaling pathway
108934700
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108934700
09171 Infectious disease: bacterial
05132 Salmonella infection
108934700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sfm04131
]
108934700
04121 Ubiquitin system [BR:
sfm04121
]
108934700
Enzymes [BR:
sfm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108934700
Membrane trafficking [BR:
sfm04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
108934700
Ubiquitin system [BR:
sfm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
108934700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
TRAF3_RING
zf-RING_2
zf-C3HC4_4
TRAF6_Z2
zf-RING_UBOX
U-box
SlyX
zf-RING_5
zf-TRAF_2
RING_XB3-XBAT31
zf-RING_4
DUF7310
Sina_ZnF
Motif
Other DBs
NCBI-GeneID:
108934700
NCBI-ProteinID:
XP_018608259
LinkDB
All DBs
Position
11:complement(1815968..1821264)
Genome browser
AA seq
539 aa
AA seq
DB search
MPSEKLKMSLSYQEVDSLEGASCVSELSSRTSGLSSTGSSATLLSSLSLQKKVDPQGYDV
EFDPPLELKYKCPMCMLGLRAAVQTPCGHRFCRGCIEKFIRDSGPRCPVDNEELQEDQLF
PDNFAKREILSLTVICPHEDCDQRMELRKLDGHRALCQFALVPCPMCQDSVRKNQLEEHA
AQHCLRCLVSCPNCAQMFIYTERKVHEQLCPLAGVVCEYCGVELIRDQLVSHYNTDCLKA
PVACPCSSFGCQEKMQRSALAQHMQEFTQIHMRHMADYLRSQSNGSSVPAPREPTDGRGV
ARARGSCECSQQWQDLRKIMLELEARLVLQDHQVRELSIRNTTQAAQVADLRRRLRCLDE
TVRELEAQQCQGVFLWRVEGFSALLRSQEAGQPVVIYSPAFYMGRPGYKLCLRLHLQTPS
APCWANYMSLFVHTMQGAFDNQLYWPLRGTIRLAILDQAEGHHYERVMEANLDLHAFQRP
VLPCNPKGFGYVTFLHLQVLQEHQYVQDDTLLVRCKVTPYCAPSLQQDTFQSRDAEVSL
NT seq
1620 nt
NT seq
+upstream
nt +downstream
nt
atgccttctgagaagctgaaaatgagcctgtcctaccaggaggtggacagcctggaggga
gcctcctgtgtgtccgagctgtccagtcgcacctctggcctgagttccactgggagctct
gcaaccctcctgtcctccttgagcctgcaaaagaaggtggaccctcaaggatacgatgta
gagttcgatccgccgctggaactcaagtacaagtgtcccatgtgcatgctgggtctccgg
gcagctgtgcagacgccctgcggacaccgcttctgtcgcggctgcatcgagaagtttatc
cgtgattcgggtccccgatgcccggtggacaacgaggagctgcaggaggatcagctcttc
ccagataactttgcaaagcgtgagattctgtccctcactgtgatctgcccccacgaggac
tgcgaccagaggatggagctccgcaagcttgacggtcacagggcgctctgccagtttgcc
ctggtgccgtgcccaatgtgccaggactcggtgaggaagaaccagctggaggaacatgct
gcacagcactgcctgcgctgcctagtctcctgtcccaactgcgcacagatgttcatttac
acagagagaaaggttcacgagcagctgtgtcctctggccggtgtggtgtgcgagtactgt
ggtgtggagcttattcgggaccagctggtgtcacactacaacaccgattgtcttaaagct
cctgtcgcctgtccctgcagcagcttcggatgtcaggaaaagatgcagcgcagcgccctt
gcacagcacatgcaggagttcacacagatccatatgcggcacatggcagactacctgcgc
agccagagcaacggcagcagcgtgccagcacctcgggagcccacggacggcagaggggtg
gcgagagctaggggttcctgtgagtgcagtcagcagtggcaggacctgcgcaaaattatg
ctggagctggaggccaggctggtgctgcaggaccaccaggtgcgggagctgagcatccgc
aacaccacacaagccgcccaggtggcagatttgcgcagacgactgcgctgcctggacgag
acggtgcgggagcttgaggcacagcagtgccagggggtcttcctgtggcgggtggaggga
ttctccgcacttctgcgcagccaagaggcaggccagccggtggtcatctatagccctgcc
ttctacatgggtcgtccagggtacaagctgtgcctgcggctgcacctgcagacacccagt
gccccatgctgggcgaactacatgtccttgtttgtgcacaccatgcagggagcgtttgac
aaccaattgtactggccactgcggggcaccatccggctagccatcctagaccaggcagag
ggccaccactacgagagagtgatggaagctaacctggacctgcacgcttttcagaggccc
gtgctcccctgcaaccccaagggcttcggctacgtgactttcctccacctccaggtgctg
caggagcaccagtacgtgcaggacgacaccttgctggtgcgctgcaaagttactccctat
tgtgcccccagcctgcagcaggacacctttcagtcacgtgacgccgaagtgtctctatga
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