Shigella flexneri 2003036: SFy_5253
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Entry
SFy_5253 CDS
T03267
Name
(GenBank) NAD-dependent DNA ligase adenylation domain protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfn
Shigella flexneri 2003036
Pathway
sfn03030
DNA replication
sfn03410
Base excision repair
sfn03420
Nucleotide excision repair
sfn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFy_5253
03410 Base excision repair
SFy_5253
03420 Nucleotide excision repair
SFy_5253
03430 Mismatch repair
SFy_5253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfn03032
]
SFy_5253
03400 DNA repair and recombination proteins [BR:
sfn03400
]
SFy_5253
Enzymes [BR:
sfn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFy_5253
DNA replication proteins [BR:
sfn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFy_5253
DNA repair and recombination proteins [BR:
sfn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFy_5253
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFy_5253
MMR (mismatch excision repair)
DNA ligase
SFy_5253
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFy_5253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_OB
DNA_ligase_aden
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AIL38021
LinkDB
All DBs
Position
complement(3785550..3787067)
Genome browser
AA seq
505 aa
AA seq
DB search
MEDGVYDQLSARLTQWQRCFVSEPRDVMMPPLNGAVMHPVAHTGVRKMADKNALSLWMRE
RSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVLQTVSGPLANS
TLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQGNSDTLNSLAVFVWAWPDGPQLMTDR
LKELATAGFTLTQRYTRAVKNADEVARVRNEWWKAKLPFVTDGVVVRGAKEPESRHWLPG
QAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQ
EWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNPLTCYFASDVCQEQFIS
RLVWLGSKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWH
QFNLARNQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVI
EWKENAQIKKLGSWLAAQQITGFEP
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
gtggaagacggtgtttacgatcagttaagcgcccgtcttacgcagtggcaacgctgcttt
gtgagcgagccccgcgacgtgatgatgccgcctttaaatggtgcggttatgcatccggtt
gcccatacgggtgtacgcaaaatggcggataaaaacgcattaagtctgtggatgcgagaa
cgtagcgatctttgggtgcagccaaaagttgatggcgttgcggtaaccctggtttatcgg
gacgggaaactgaacaaagcaatcagtcgcggtaatggcctgaaaggcgaggactggacg
cagaaagttagcttaatttccgctgtgctgcaaaccgttagcgggcctttagccaacagt
acgcttcagggggaaatatttctccagcgcgaggggcatatccaacaacaaatgggggga
ataaatgcccgcgcaaaagttgctggcctgatgatgcgccaggggaatagcgacacgcta
aactcactggctgtttttgtctgggcatggccggatggaccgcagttaatgaccgatcgt
ttaaaggagctggctaccgcaggttttactctaacgcagaggtatacccgtgcggttaaa
aatgctgatgaggttgcgcgcgtacgcaatgagtggtggaaagcgaaattacccttcgtc
accgatggcgtggttgtgcgaggggctaaggaacccgaatcccgtcattggctaccgggc
caggcggagtggctggtggcctggaaatatcaacctgtagctcaggttgccgaagtgaag
gcgattcagtttgcggtgggtaagagcggtaaaatatcggtggttgcgtcactcgcacct
gtcatgctggatgataaaaaagtccagcgggtgaatattggttccgtcaggcgctggcag
gagtgggatattgcgcctggtgatcagatcctcgtcagccttgccggtcagggtattcct
cgcattgatgatgtggtctggcgcggtgcagaacgtacaaaaccgacaccaccagaaaac
cgctttaacccgttgacctgctactttgcttctgatgtttgtcaggaacagttcatttca
cgcttagtctggctggggtcaaaacaggttctggggctggatggcattggtgaggccggt
tggcgcgcgctgcatcagactcatcgctttgagcatatcttttcctggcttttattaacg
ccagagcaattacagaacacgccggggatcgcgaaaagtaaaagtgcgcagttatggcat
cagtttaatctggctcgtaaccagccttttactcgctgggtgatggcaatgggaataccg
ctaacccgggcggcgcttaatgccagtgatgaacggtcctggtcgcaacttttatttagc
acggagcagttctggcagcagctgccggggactggatctgggcgcgccagacaggttatt
gaatggaaggaaaatgcgcaaatcaagaagctgggcagttggctggctgcccagcagatc
acaggttttgaaccttag
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