Chania multitudinisentens: Z042_04270
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Entry
Z042_04270 CDS
T02987
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfo
Chania multitudinisentens
Pathway
sfo03030
DNA replication
sfo03410
Base excision repair
sfo03420
Nucleotide excision repair
sfo03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Z042_04270 (ligA)
03410 Base excision repair
Z042_04270 (ligA)
03420 Nucleotide excision repair
Z042_04270 (ligA)
03430 Mismatch repair
Z042_04270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfo03032
]
Z042_04270 (ligA)
03400 DNA repair and recombination proteins [BR:
sfo03400
]
Z042_04270 (ligA)
Enzymes [BR:
sfo01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Z042_04270 (ligA)
DNA replication proteins [BR:
sfo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Z042_04270 (ligA)
DNA repair and recombination proteins [BR:
sfo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Z042_04270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Z042_04270 (ligA)
MMR (mismatch excision repair)
DNA ligase
Z042_04270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Z042_04270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Ned1_M
Motif
Other DBs
NCBI-ProteinID:
AHG18904
UniProt:
W0L967
LinkDB
All DBs
Position
2613145..2615166
Genome browser
AA seq
673 aa
AA seq
DB search
MESINEKINQLRISLRHHEYQYHVLDAPEIPDVEYDRLMRELIVLEDAHPELITADSPTQ
RVGAAPLAAFEQVHHEVPMLSLDNVFDEEGYLAFYKRVQDRLKSSEPLTFCCELKLDGLA
VSLLYEEGELVRAATRGDGSTGENITSNVRTIRAIPLRLTGENIPSRLEIRGEVFMPHAG
FEQMNEDARRKDGKVFANPRNAAAGSIRQLDPRITTKRPLTFFCYGVGLLEGGELPRSHW
ERLMQFKAWGLPVSDRVKRCTGSDEVLAFYRQIEQERIQLGFDIDGVVVKIDDIDLQETL
GFVSRAPRWATAFKFPAQEQITIVREVEFQVGRTGAITPVARLEPVQVAGVIVSNATLHN
ADEIERLGLRIGDTVIVRRAGDVIPKVVGVIEDRRPQDARAVVFPQHCPVCGSDVERVEG
EAVARCTGGLICGAQRKEALRHFVSRRALDVDGMGEKIIEQLVDKEYVQNPADLFRLSAG
ILTGLERMGPKSAQNLVNALETAKQTTFARFLYALGIREVGEATAANLAAHFGSLEKLRA
ADLEALKEVQDVGEVVAEHVVNFFAEEHNQRVIEELIGPDVGIHWPASVAVVVEEIDSPF
AGKTVVLTGSLSQLSRDEAKDRLVALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIK
VIDEAEMIRLLGA
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atggaatcgattaacgaaaaaatcaatcaactacgaatctcactgcgccatcacgaatat
caatatcatgtgcttgatgcgcctgagatcccggatgtggagtatgatcgtctgatgcgc
gaactgatcgttttggaggatgcccatccagaactgatcaccgccgactcacccacccag
cgtgttggggctgcacccttggcagcgttcgagcaggtgcatcatgaagtgccaatgctt
tctttggacaacgtattcgatgaagaaggttatctggcattttacaagcgtgtacaggat
cgcctgaaaagcagtgaaccgttaaccttctgctgcgagttaaaactggatggcctggcg
gtcagcctgctgtatgaagagggggaactggtacgtgcggccacgcgtggcgatggttcc
accggtgaaaatattacttccaatgtgcgcaccatccgcgctattccgctgcgtttgacc
ggggaaaatattccctctcggctggaaatacggggtgaagtattcatgccgcatgccggt
tttgaacagatgaatgaagatgcgcgtcgtaaagacggtaaggtgtttgccaatccgcgt
aatgcggccgcagggtcaattcgtcagctcgatccgcgtatcaccaccaagcggccactg
acgttcttctgttacggcgtgggcctgctggaagggggagaattgccgcgtagccactgg
gaacgcctgatgcagtttaaagcctggggtttaccggtgagcgatcgtgtcaaacgttgc
accggcagcgatgaggtgctggcattttatcgccagattgaacaagagcgtatccaactg
ggtttcgatatcgacggcgtagtggtgaagatcgacgatattgatctgcaagaaacactt
ggctttgtgtcacgagcgccgcgttgggcaaccgccttcaaattcccggcgcaggaacag
atcaccattgtgcgcgaagtcgagttccaggtagggcgtaccggtgccattactccggtt
gcccggttggagccggtgcaggtggccggtgtgatcgtcagcaacgccactttgcataat
gcagatgagatcgaacgtttgggcctgcgtattggcgacacggttattgtgcgccgtgct
ggtgatgtgatccccaaagtggtaggggtgatagaagatcgtcgcccacaggatgcgcgc
gcagtggtgttcccgcagcactgcccggtttgtggttctgacgtggagcgcgtggagggc
gaggcggtggcgcgttgcactggtgggttgatttgtggcgcccagcgtaaagaagcgctg
cggcactttgtctctcgccgtgcgttggatgttgacggcatgggggagaaaatcattgag
caactggtggacaaagaatatgtgcaaaacccggccgatctgttccgtctttccgctggt
attttgaccgggctcgaacgcatggggccgaagtcggcgcagaacctggttaatgctttg
gaaaccgccaagcaaaccacttttgcccgtttcctgtatgcgctgggcatccgtgaagtg
ggggaagccacggcggctaacctggcagcccactttggttcgctggagaaactgcgagcg
gccgatctggaagcgctcaaagaagtgcaggatgtgggggaagtggtggcggagcacgta
gtgaatttctttgccgaagaacataaccaacgggtgatcgaggagctgatcggcccggat
gtgggtatccattggcctgcgtcggtggccgtggtggtggaggagatagacagcccattt
gcgggtaaaaccgtggtgctgaccggctccctcagccagctttcccgggatgaagccaag
gatcgtttggtggcattgggggctaaggtgagcggcagtgtttccaagaaaactgacctg
gtgattgcgggcgaggctgcgggctccaagctggttaaagcgcaagaattggggatcaaa
gtgatcgacgaagcggaaatgatccgcctgctgggtgcctga
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