Stenotrophomonas forensis: K5L94_14555
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Entry
K5L94_14555 CDS
T10605
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfoe Stenotrophomonas forensis
Pathway
sfoe03030
DNA replication
sfoe03410
Base excision repair
sfoe03420
Nucleotide excision repair
sfoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K5L94_14555 (ligA)
03410 Base excision repair
K5L94_14555 (ligA)
03420 Nucleotide excision repair
K5L94_14555 (ligA)
03430 Mismatch repair
K5L94_14555 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfoe03032
]
K5L94_14555 (ligA)
03400 DNA repair and recombination proteins [BR:
sfoe03400
]
K5L94_14555 (ligA)
Enzymes [BR:
sfoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K5L94_14555 (ligA)
DNA replication proteins [BR:
sfoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K5L94_14555 (ligA)
DNA repair and recombination proteins [BR:
sfoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K5L94_14555 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K5L94_14555 (ligA)
MMR (mismatch excision repair)
DNA ligase
K5L94_14555 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K5L94_14555 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WDM65965
LinkDB
All DBs
Position
complement(3121686..3124157)
Genome browser
AA seq
823 aa
AA seq
DB search
MPMSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRLVRELEALEREHPELARADS
PTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLQFSAEPKMDG
LAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKNWPDVLEVRGEVYMAR
ADFEAYNERARQQGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDT
HSGTLAQLGAWGFPVSALCKVVEGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQ
AMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATL
HNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRPPGTTPWQMPTRCPVCGSEIVRE
EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLN
RDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGAVLNAVLKLDGTDPGWRAQALVQPASF
DWNTKKIATKWADNLIAAIDASRAATLERLLFALGIEHVGESTAKALAQWFGDLELIRHL
PWPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLA
QLLVESEIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAQWLDAEGHG
VMLLAAEKAMQQILANAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSG
SVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atcccgatgagccccagccccgccgaacgcgccgaagaccttcgccggcagatcgcccag
gccaaccgcgcctaccacgagctggatgcgccggagatccccgacgtcgactacgaccgg
ctggtgcgcgagctggaagcgctggagcgcgagcatccggaactggcacgtgccgacagc
ccgacccagcaggttggcgcgcgtccctccggccgtttcccggaagtacgccacgcggtt
ccgatgctgtcgctgtccaatgccttcagcgatgaggaagtggccgacttcgtgcgccgc
atcgatgagcgcctgggccgtcgcagcctgcagttctcggccgagccgaagatggatggc
ctggcgatcagcctgcgctacgaagaaggtcatttcgtgttgggcgccacccgcggcgat
ggcagtaccggcgaggacgtgactgccaacctgcgtgagatcggcgacatccccaagcgc
ctgcatggcaagaactggcccgacgtgctggaggtgcgcggcgaggtctacatggcccgc
gccgacttcgaggcctacaacgaacgtgcgcgccagcagggtggcaaggtgctggccaac
ccgcgcaatgccgccgccggttcgttgcgccagctggacccgaagatcagcgcgcagcgc
aggctgagcttcttcgcctacggcaccggcgaggtgcagggcggcgaactgcccgacacc
cattcgggcacgctggcccagcttggcgcctggggcttcccggtcagtgcgctgtgcaag
gtggtggaaggcaccgacggcctgctcggctattaccgcgatatcggtgagcgccgcgat
ggcctgccgttcgacatcgatggcgtggtctacaagctggatgaccgcgccggccagcag
gcgatgggcttcgtctcgcgcgcaccgcgctgggccatcgcgcacaagttcccggcgcag
gaacagagcacgaccgtggaggcgatcgagatccagatcggccgcaccggtgccgcgacg
ccggtcgcgcgactggcgccggtggcggtggccggtgtgatcgtgtccaacgccaccctg
cacaacgccgaccagatcgcacgcttggatgtgcgcgtgggcgatagcgtgatcgttcgc
cgcgccggtgacgtgatcccggaagtggtcagcgtcatcctcgaccgccgcccgccgggc
accacgccatggcagatgccgacgcgctgcccggtgtgcggttcggagatcgtgcgcgag
gaaggcgctgcagcatggcgttgctcgggcgaactgtcctgcccggcacagcgcaaggaa
gccattgcccatttcgcctcgcgccgcgcgatggacatcgatggtttgggggacaagtac
attgaaaccctggtcgacgcgggcatcgtcaagagcgtggccgacctgtaccgcctcaac
cgcgaccagctgctgcacctgaagctggtgctggatgctgaagacccttccgcactggcc
gccgcgctgaaactgcacctgccggccgaaggcagcggtgcggtgctcaacgcggtgctc
aaactggatggcactgatccgggctggcgcgcacaggcgctggtacagccggccagcttc
gattggaacacgaagaagatcgccaccaagtgggccgacaacctgatcgcggcgatcgat
gcaagccgcgccgccacgctggagcgcctgctgttcgcgctcggcatcgagcacgtgggc
gagagtacggccaaggcgttggcgcagtggttcggtgatctggagctgatccgccacctg
ccgtggccactgttcaagcgcgtaccggacatcggcggcgaagtggcgcgttcgctcggt
cacttcttcgagcagcagggcaaccagcaggccatcgatgacctgctgcaggtcggccag
gtgcgcatcagtgatgtgcatgcgcccagtgcaaagttgcgcgaaggcctggatcttgcg
cagctgctggttgaatcggaaatccccggaatcacgcgcctgcgcgcggagaagctggtg
gcggcgttgccgggcgcccaggcggtgctggatgccgaacatggccagttcgtcaacgcg
ggcctgccggacgacaccgcgcgcggcctggcgcagtggctggacgccgaaggtcatggc
gtgatgctgctggcggccgaaaaggcgatgcagcagatcctggccaacgcgccggcgctg
gccgagatcgtggccggcccgctggacgggcagaccgtggtgctgaccggcaccctggcc
cagctcacccgcgatgccgccaaggagcgcctggaagcgctcggtgccaaggtctccggc
agcgtctcgaagaagaccagcttcgtagtggccggtaccgaggcgggctccaaactggac
aaggcgcagtcgctgggcgtaccggtctgggacgaggaccgcctgctggcctacctcgcc
gaacacgaatga
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