KEGG   Salvelinus fontinalis (brook trout): 129818594
Entry
129818594         CDS       T11136                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    129818594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sfon03000]
    129818594
   04121 Ubiquitin system [BR:sfon04121]
    129818594
   03036 Chromosome and associated proteins [BR:sfon03036]
    129818594
Enzymes [BR:sfon01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     129818594
Transcription factors [BR:sfon03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    129818594
Ubiquitin system [BR:sfon04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     129818594
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    129818594
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     129818594
SSDB
Motif
Pfam: PHD_4 zf-CXXC JHD F-box-like F-box JmjC Cupin_8 LRR_At1g61320_AtMIF1 PsbP
Other DBs
NCBI-GeneID: 129818594
NCBI-ProteinID: XP_055730618
LinkDB
Position
21:complement(29613701..29667468)
AA seq 1449 aa
MEASAESGRKLRSICRTMYDENEDFSDVEEIANVRGFNLEEKLVSDSYNTHFVQLMDGKD
FTYEYVQREALQTPLIFKAKDGLGIRMPDPEFTVSEIKGLVGSRRAVDVMDVSTQKGSEM
SMAQFVRYYETPEEERDKLFNVISLEFSHTKLENLIKRPTVVDLVDWVDNMWPLKLKRRQ
TEATNVISEMKYPKVQKYCLMSVKGCYTDFHIDFGGTSVWYHVFKGGKVFWLVPPTPHNL
ALYEDWVLSGKQSDIFLGDRADGCQRVELKQGYTFFIPSGWIHAVYTPEDTLVFGGNILH
SFNIPMQLSIYEIENRTKVNSKFRYPFYHEMCWYVLERYVHCLTKRSHLTPEFRREPLLI
DLETKLSTESPSSDSRSQDMDEEDSCETQQGRDEQGDRSAFDDPCSPDNRKGKSSGLRHL
KAALSNDSEDSCIPTSTQPPEFPKTPFGSPVSESPSKWTHLTEFELKGLKALVEKLEALP
ENKKGVPDGIKDPQALLEDMKVVLKEHEDDDPKMAATGVPVVFWPKKSAKTLSRAAEKAT
TTKDIVTSGEVNQRLSDEQTLQQTDRRFQQRRQQRHLDQQRPPNRPKPKMAASSPAAAVK
LSASRSTSGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVL
PHTAVCLVCGEAGKEDTVEEEEDKFNRMLMECSICNEIVHPLCLKVKDSGGVVNDELPNC
WECPKCNHSGKTGKAVKQKRGPGFKYASNLPGSLLKDSRLNRDIKEEPDPPSLPTSPTGT
TATVTTVKRKADRDDTPKTKAEESPPLKKRSPMLSLSGLPRPRPEDNPLRKKRMLFDIKD
EDEPPVVKKKKKPPKPEDLLIPKLLKTIKQEQVDEDEEHKDHEDEEEDRCTGDRVATKGK
REEEEEDGDEEEEKDGGVEDSKDGTVKTMLSPLLRTSTARESDQSCSSSPRAGPSSEGCD
APEKTPGQLKARKRRRLPNKELSKELSKELNLEIQKTEDCLANQNRRPLKREDSLANNSR
RPLKTEDSSTNPNRRPLRIEDSPANHNRRPIKTEDGLSNHNRRPLKIEDRLVNRNHRPMK
TEPESDGEEPKLKRPLNNCTSDLGDWLHPRGRELNGTARQLSPLGWSRSPPITPICPRPP
PCRSPPKCVQMERHVIRPPPISPPPDRLPLEDGQTHMMHREVWMAVFGHLAHRDLCVCMR
VCKTWNRWCCDKRLWTRIDLNRCKSITPLMLSGIIRRQPVALDLSWTNISKKQLSWLINR
LPGLRMLLLSGCSWVAVSALCTASCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLD
NRSKLRNVVDLRLAGLDITDTSLRLLIRYTPQLTRLDLSYCNHVTDQSVNILTAAGTTTR
DSLTDINLSVCNRVTDQSLTYFKRCGSICHIDLRYCKQVTKEGCERFIAEMSVSVQFGLV
EEKLLQKLC
NT seq 4350 nt   +upstreamnt  +downstreamnt
atggaagcgagtgcagaatctggacgcaaactgcgctccatctgccggacaatgtatgac
gaaaacgaggacttctctgacgttgaagaaattgcaaatgtcaggggtttcaatctggag
gagaaacttgttagcgactcatacaacacacatttcgttcagttgatggatggcaaagat
ttcacttatgagtatgttcagagagaggcacttcagacccctcttattttcaaagccaaa
gatggactgggaatcagaatgccagacccggagttcaccgtcagtgagattaaaggtttg
gttggtagccgtcgtgccgttgatgtgatggatgtgagcacccagaaaggctctgagatg
agcatggcccagtttgtccgctactatgagacgcctgaggaagagagggacaaactcttc
aatgttatcagcctagagttcagccacaccaaactggagaacctcatcaagaggcccact
gtggtggatttagtggactgggtggacaacatgtggcccctaaaactgaaacgaagacaa
accgaagccactaatgtcatctcagagatgaagtaccccaaagtacagaagtactgtttg
atgagcgtgaagggctgctatactgacttccacattgatttcgggggcacgtctgtgtgg
tatcacgttttcaagggagggaaggtgttctggctggtgcctccgacgcctcataacctt
gccctgtatgaggactgggttctgtcaggcaagcagagtgacatcttcctgggagaccgt
gcagatggctgccagagggtggagctgaaacagggctacaccttcttcatcccctctggc
tggattcatgcagtctacacccccgaggacacgctggtgtttggaggcaacattctgcac
agctttaacattcccatgcaactctccatctatgagatagagaataggactaaggttaat
tccaagttccgctacccattctaccatgagatgtgctggtatgtcctggagaggtacgtg
cactgcctgaccaagcgctcccatctcactccggagttccgcagagagcctctgctaatc
gacttggaaactaagctgagcacagagagcccctcctctgactcccggagtcaggacatg
gacgaggaggactcctgcgagacgcagcagggacgagatgaacagggtgacaggtcagca
tttgatgatccctgctctcctgataacaggaagggtaaatccagcggccttcgacatctc
aaagctgccttgtccaatgattctgaggacagctgcatccccacctccacccagcctcca
gagttccccaaaaccccctttggctcgccagtctcagagtctccgagtaaatggactcat
ctgactgagtttgaactgaagggcctcaaggcccttgtggagaaactggaagccctccct
gaaaataagaagggtgttccagatggcatcaaggacccccaggccctgctggaggacatg
aaggttgtcttgaaggaacatgaagatgatgaccccaaaatggctgccactggagtacct
gtggtgttctggcctaagaagtctgccaagacactatccagagccgctgagaaagcgaca
actacgaaagacattgtgacttctggggaagttaatcagagactctctgatgaacagact
ctccagcagacagaccggcgattccaacagagaagacaacaacgacatttggaccagcag
cggcctcccaacagacccaaacccaaaatggcggcctcgtctcctgcggcggcagtcaag
ctgtcggctagccggagcacgtctggcgcccggaggaggaggacgcgttgtcggaagtgc
gaggcgtgcctgaggacagagtgtggagaatgccacttctgtaaagacatgaagaagttt
ggagggccaggtcgcatgaaacagtcctgcatcatgaggcagtgtatagcgcctgttctg
ccccacacagcggtgtgtctggtgtgtggagaggcagggaaggaggacacagtggaggaa
gaggaggacaagtttaaccgcatgctcatggagtgctccatctgcaatgagatagtccat
cctctctgcctcaaggtgaaagattccggtggagttgtaaatgacgagttgccaaactgc
tgggagtgtccaaaatgcaaccattcagggaagacagggaaagccgtcaagcaaaaaaga
ggaccagggttcaagtacgcgtccaaccttcccgggtcgctgctgaaggactcacgattg
aaccgtgacatcaaggaagagcccgacccgcccagcctgccaacatcacccactgggacc
acggcaaccgtgaccacagtgaagaggaaggcggatcgtgatgacacccccaaaacgaaa
gcagaggaatctcctcctctgaagaaacgttctcccatgctgtctctgagcggcctgccc
cgaccaaggcctgaggacaaccctctgaggaagaagaggatgctgttcgacatcaaagat
gaggacgagcctcctgttgtcaagaaaaagaagaagcccccaaaacctgaagaccttttg
atccccaagctgttaaagaccatcaagcaagagcaagtagatgaggacgaagaacacaaa
gaccatgaagatgaagaggaggacagatgcacaggggacagggttgcaactaaagggaaa
agagaagaggaggaagaggatggagatgaggaggaggagaaagatggtggtgtagaggac
agtaaagacggtacagtaaagactatgctgagtccactgctacggacgtctacggccaga
gagagtgaccagtcctgctccagctctccccgggcagggcccagcagtgaagggtgcgat
gccccagagaagacacctggccagctgaaggcacgcaagcgccgccgcctccccaacaaa
gagctgagcaaggagctgagcaaagagctcaatctggagattcagaagaccgaggactgc
ctggccaatcagaaccgcagaccactgaagagggaggacagcctagccaataacagccgt
cgacccttgaaaactgaggactcctcgaccaatccgaaccgcagaccactaagaatagag
gactctcctgccaatcataatcgcaggccaattaagactgaggatggcctatccaatcac
aaccgccggccattgaagatcgaggacaggttagtcaatcggaatcacaggccaatgaag
acagagcctgagagcgacggggaggagcctaagcttaagcggccactcaacaactgcacc
agtgacctcggagactggctccaccccagggggcgggaattaaatgggacggcacgccag
ctctctcccctggggtggagccgcagccctccaatcacacccatttgcccacgcccccct
ccctgccgctcaccgcccaagtgtgtccagatggagcgtcacgtgatccggccgcctccc
atcagccccccgccagacagactgcccctggaagacggacagacccacatgatgcacagg
gaggtgtggatggccgtgttcgggcacctcgcacacagagacctttgtgtctgcatgcgc
gtctgcaaaacctggaacagatggtgctgtgataagaggctgtggacgcggatcgatctg
aaccgctgtaagtccatcactcccctcatgctgagtggcatcatccgcagacagcctgtg
gctctggacctcagctggaccaacatctccaagaagcagctcagctggctcatcaacagg
ctgccaggtctgcggatgctgctgctctcaggctgctcctgggtggctgtgtctgccctc
tgcactgccagctgcccactgctgaggaccctagatgtccagtgggtagaggggctcaaa
gatgcccagatgagggacctgctctcaccccccacagacaacaggccaggtcagctggac
aacaggagtaagctgcggaatgtggtggacctgcgtctggccgggctggacatcacagac
acctccctgcgcctcctcatccgctacacgccccagctgaccagactggacttgagctac
tgcaaccacgtcactgaccagtcggtcaacatcctgaccgctgctgggaccaccaccaga
gactcgctcactgacatcaacctctccgtgtgcaacagagtcacggaccagtcgctgacc
tacttcaagcgctgtggaagcatctgtcatattgacttgcgctactgcaagcaggtgacc
aaggagggctgtgagcggttcattgctgagatgtcagtgagtgtacagtttggacttgta
gaggagaaactactgcagaaactctgttag

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