Salvelinus fontinalis (brook trout): 129829246
Help
Entry
129829246 CDS
T11136
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component-like
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129829246
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129829246
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129829246
Complex C
U5 SnRNP specific factors
129829246
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
129829246
NCBI-ProteinID:
XP_055746909
LinkDB
All DBs
Position
2:complement(83356931..83374013)
Genome browser
AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLEADDRDADEADEDEDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAITICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGNINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNTQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIIQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggatctgtatgacgagtttgggaactacattggtccagaactagactctgac
gaggatgatgatctggaggcagacgacagagatgcggatgaggctgatgaggatgaggat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggacgcacagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcaccacggaaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctcttcactgagcaggagcgaggggttggtatcaag
agcactcccgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgacagcaggcatccgactctcc
gacggtatcgtgcttttcattgacgcagctgaaggagtgatgttgaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccatcaccatctgcatcaacaaggtggaccgc
ctcatcgtggagctcaagctgccccctacagacgcctactacaaactacgccacatagtg
gacgaggtcaacgccatgctcagcacctactctacagacgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgtgtttgcttcaccctgggctcc
ttcgccaagatctactccgacacctacggtaacatcaactacacagagtttgccaagagg
ctttggggggacatttatttcaaccccaaaacgcgcaggttcactaagaaagcccccacc
agtaacacccagcgtagctttgtggagtttgtgttggagcctctgtacaagatcctatcc
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagttggggatccac
ctggtcaaagaggagctgaagctcaacatcagaccgctactcaggctggtctgtaagcgc
ttctttggagagttcactggctttgtggacatgtgcgtgcagcatatcccctcaccacag
gggggcgccaagaacaagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccatgcgttcggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggagagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgtctctggatcaacgtcgccaggtaccagatagaagtgaac
cgtgtgcctgccggcaactgggttctcattgagggctgtgaccagcccatcgtcaagacc
gccaccatcaccgagccccgagggaacgaggaggcccagatcttccggccgctcaagttc
aacacggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagctgcccaag
atgttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgtgatcctgggtactggggaactctacctggactgtgtcatgcac
gacctgcggaagatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagcctctggagaagggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggagagtttttccagaccaagtat
gactgggatctcctggctgccaggtctatctgggcctttgggcccgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctcggtt
aaggacagcatcatccagggcttccagtggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccaccgccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccatcgactcgtttggc
ttcgagactgacctgagaacacacacacagggacaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcatcgtgatcaggccgctggag
ccccagcctgcccctcacctggccagagagttcatgatcaagacccgccggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttcttcgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
DBGET
integrated database retrieval system
