Salvelinus fontinalis (brook trout): 129833005
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Entry
129833005 CDS
T11136
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
129833005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfon03041
]
129833005
Spliceosome [BR:
sfon03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
129833005
Complex C
U5 SnRNP specific factors
129833005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
MMR_HSR1
Motif
Other DBs
NCBI-GeneID:
129833005
NCBI-ProteinID:
XP_055753188
LinkDB
All DBs
Position
34:complement(8775580..8788884)
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AA seq
970 aa
AA seq
DB search
METDLYDEFGNYIGPELDSDEDDDLEADDRDVDEADEDDDDEPADADEDVPGMEVVLHED
KKYYPTAEEVYGPEVETLVQEEDAQPLTEPIIKPVRNKQFTLMEQELPSTVYDMEFLADL
MDSPELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRDDMDLRYTDILFTEQERGVGIK
STPVTMVLPDSRGKSFLFNIMDTPGHVNFSDEVTAGIRLSDGIVLFIDAAEGVMLNTERL
IKHAVQERLAVTICINKVDRLIVELKLPPTDAYYKLRHIVDEVNAMLSTYSTDENLVVSP
LLGNVCFASSQYCVCFTLGSFAKIYSDTYGNINYTEFAKRLWGDIYFNPKTRRFTKKAPT
SNTQRSFVEFVLEPLYKILSQVVGDCDTSLPRVLDELGIHLVKEELKLNIRPLLRLVCKR
FFGEFTGFVDMCVQHIPSPQGGAKNKIEHSYTGGLDSDLGEAMAECDPDGPLMCHTTKMY
STEDGVQFHAFGRVLSGTIQAGQPVKVLGENYTLEDEEDSQVCTVGRLWINVARYQIEVN
RVPAGNWVLIEGCDQPIVKTATITEPRGNEEAQIFRPLKFNTASVIKIAVEPVNPSELPK
MLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVVTF
CETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQTKY
DWDLLAARSIWAFGPDTTGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLCDE
PIRNVKFKILDAVIAQEPLHRGGGQVIPTARRVVYSAFLMATPRLMEPYYFVEVQAPADC
VSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSVFH
HWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLELA
KQDVVLNYPM
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atggagacggacctgtatgacgagtttgggaactacattgggccagaactagactctgac
gaggatgatgatctggaggcagatgacagagatgtggatgaggctgatgaggatgatgat
gatgagccggctgatgctgatgaagatgtcccaggaatggaggtagttctgcacgaggat
aagaaatactatcctacagcagaggaagtgtacgggccggaggtggaaactttagtccag
gaagaggatgcgcagcccctcacagaacccatcatcaagcctgtaaggaacaagcagttc
actctgatggaacaggagctaccttccactgtttatgacatggagttcctggctgaccta
atggacagtcccgagctgatccgtaacgtcaccctgtgtggccacctgcatcacggcaag
acgtgtttcgtggactgcctgattgaacagacacacccagagatcaggaagagagatgac
atggatctccgttacacagatatcctcttcactgagcaggagcgaggggttggtatcaag
agcacccccgtcacaatggttcttccagactccagaggcaaatccttcctcttcaacatc
atggacacaccaggccacgtcaacttttcggatgaggtgaccgcaggtatccgactctcc
gacggcatcgtgcttttcatcgacgcagcagaaggcgtgatgttgaacacagagcgtctg
atcaagcacgcagtccaggagcgtctggccgtcaccatctgcatcaacaaggtggaccgc
ctcatcgtggagctcaagctgcccccgacagacgcctactacaagctacgccacatagtg
gacgaggtcaacgccatgctcagcacctactccacagatgagaacctggtggtgtctcct
ctcctggggaacgtgtgtttcgccagctctcagtactgcgtttgcttcaccctgggctcc
ttcgccaagatctactctgacacctacggtaacatcaactacacagagtttgccaagagg
ctgtggggagacatttacttcaaccccaaaacacgcaggttcactaagaaagcccccacc
agtaacacccagcgtagctttgtggagtttgtgttggagcctctgtacaagatcttatcc
caggtggtgggtgactgtgacacgtctctgcctcgggtgctggatgagctgggcatccac
ctggtcaaagaggagctgaagctcaacatcagaccgctactcaggctggtctgtaagcgc
ttctttggagagttcaccggcttcgtggacatgtgcgtgcagcacatcccctcaccacag
gggggcgccaagaacaagatagagcacagctacactggaggactggactcagacctgggg
gaggccatggcagaatgcgaccctgatggtcctctgatgtgccacaccactaagatgtac
agtactgaggacggggtgcagttccatgcgttcggccgggtgctgagcggtaccatccag
gcgggccagccagtcaaggtgctgggagagaactacactctggaggacgaggaggactcg
caggtctgcacggtgggacgtctctggatcaacgtcgccaggtaccagatagaggtgaac
cgtgtgcctgccggcaactgggtcctgatcgagggctgtgaccagcccatcgtcaagacc
gccaccatcaccgagccccgggggaacgaggaggcccagatcttccggccgctcaagttc
aacacggcgtctgtcatcaagatcgctgtggagccagtcaacccgtcagagttgcccaag
atgttggacggactgcggaaggtcaataagagctacccctccctcaccaccaaggtggag
gagtcaggggaacatgtgatcctgggcactggggaactctacctggactgtgtcatgcac
gacctgcggaagatgtactctgagatcgacatcaaggtggctgaccccgtggtgaccttc
tgtgagacggtagtggagacgtcgtctctcaagtgctttgccgagacgccgaacaagaag
aataagatcaccatgattgccgagccgctggaaaaaggcctggctgaggacatagagaac
gaggtggtgcagatcacatggaacaggaagaagctgggggagtttttccagaccaagtat
gactgggatctgctggctgccaggtctatctgggcctttgggcccgacaccaccgggcct
aacatcctggtagatgacaccctgccttctgaggtggacaaggctctgctgggctctgtt
aaggacagcatcgtccagggcttccagtggggcaccagggaggggcctctgtgtgacgaa
cctatcagaaacgtgaagtttaagatcctggatgcggtcatagcgcaggagcctctacac
agaggaggaggacaggtcatccccacagccaggagagtggtgtactctgccttcctcatg
gccacccccaggttgatggagccctattactttgtcgaggtccaggccccagctgactgt
gtgtctgctgtgtacacagtactggccagacggagaggtcatgtgacccaggacgccccc
atccccgggtctcccctctacaccatcaaggccttcatcccagccatcgactcgtttggc
ttcgagactgacctgagaacacacacacagggccaggccttctccctgtccgtcttccac
cactggcagattgtccctggtgaccccctggacaagagcatcgtgatcaggccgctggag
ccccagcctgcccctcacctggccagagagttcatgatcaagacccgtcggcgcaagggt
ctgagtgaggatgtgagcatcagcaagttcttcgacgaccctatgttgttggagctggcc
aagcaggacgtggtgctcaactaccccatgtga
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