Salvelinus fontinalis (brook trout): 129840604
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Entry
129840604 CDS
T11136
Symbol
lig4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
129840604 (lig4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfon03400
]
129840604 (lig4)
Enzymes [BR:
sfon01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
129840604 (lig4)
DNA repair and recombination proteins [BR:
sfon03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
129840604 (lig4)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
129840604
NCBI-ProteinID:
XP_055764569
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Position
41:complement(20954920..20959263)
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AA seq
914 aa
AA seq
DB search
MEGTSKGESAAPQSSVAAQVPFLHLCTTLEKIQKTKLRPDKSKFLRDFIDSWRKFHAALH
KDNPTTTDSFYPAMRLIVPSFERERMAYGIKESMLAKLYIDVLGLPKNGPEANKLLNYRT
PTTSQGEAGDFALMTYFVLKKRCTSQGNLTIREVNDFLDSVAINNAGKQKDLVKKSLLHL
ITQSTALEQKWLIRMILKDMKLGVSKETVLQVFHLDAAELYNFTTDLNKVCRQLHDPSVS
LSEVSIGLFFAFKPMLAAMANMRQVEKQMGNSTFFIETKLDGERIQLHKDGDVYKYFTRN
SFEYTQQFGASPLEGSLTPFIHNVFKPHVVKCILDGEMMAYNPTADTFMQKGSKFDIKRL
VDDSELQTCFCVFDVLLVNDHKFGNETLKVRHDNLQTVFTPVKGRIHVVPKTEAKTMQEV
VNALNEAIDNREEGIMVKDPSSVYKPDKRGEGWLKIKPEYVDGLMDELDLLIVGGYWGKG
RRGGMMSHFLVAVAEAPKPGEKPSVFHTLCRIGSGYTMKELYDLGLKLAKHWKVYRKNDP
PASILCGTERPEVYIDPCNSVIIQVKAAEIVSSDMYKTNCTLRFPRIEKIREDKEWHQCM
TLAELDQFRNKASGKLFSRHLLINDNDGPEKKKRKSPAAAKPKKAVGVIDHFKSQDLSGV
TKETDMFEDVEFCVMNGNEAHPKAELEKAVARCGGIVVQNPGPDTYCVIAAVENMRVKNL
ISSDQHDVVWAAWLLECLDRRQVVPWQPCHMIHMSPSTKEHFAKEYDCYGDSYFVDTDEQ
QLREVFGRIGRADTLTAQCIAKLEERYSWDDLPTSMFRPFRVYMDRYADIGDPKSIVPAT
CLDTRALEFRFHGGTVVQKLEEGVSHVIVVEETRVLALRTLRRLFTKKFKIVRESWVTES
IKAGFLRNDNDYLV
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagggaacctcaaaaggcgaatctgctgccccccagagctctgttgctgctcaagtt
ccatttcttcacctgtgcaccactcttgaaaaaatacagaagaccaaactccgaccagac
aaatcaaagtttctccgtgacttcatagactcctggaggaagttccatgcggccctccac
aaagacaaccctaccaccacagactctttctacccggccatgcgtctcatagtcccctcg
ttcgaaagggagcgtatggcctatggcattaaagagagtatgttagccaagctctacata
gacgtcttgggtctccccaagaatggaccagaagccaacaaactgttgaattaccgcacc
cccaccacatctcagggggaggcgggagacttcgctcttatgacctactttgtgttgaag
aaacgctgcacaagccagggaaacctcaccatcagagaagtcaacgactttctggactcg
gtggccatcaacaatgccggtaagcagaaggacctggtgaagaagagcctgctgcacctt
atcacccagagcacggcactggagcagaagtggcttatccgcatgatcctgaaggacatg
aagctgggggtcagcaaagagaccgtgctccaggtgttccacttagatgcggccgagctc
tacaacttcaccacagacctaaacaaggtgtgccggcagctccacgacccatctgtgtcc
ctcagcgaagtgtccattggcctgttctttgccttcaaacctatgctggccgccatggcc
aacatgcgccaggtggagaagcagatgggcaacagcaccttcttcatagagaccaagctg
gatggagagcgcatccagctgcacaaggatggcgacgtctacaagtacttcacacggaac
tccttcgagtacacccagcagtttggtgcatcgccgctagagggctccctgacgcctttc
atccacaatgtcttcaagccccacgtagtcaaatgcatcctggatggggagatgatggcg
tacaaccccactgccgacaccttcatgcaaaaaggaagcaagtttgacatcaagaggcta
gtggatgactccgagctgcagacgtgcttttgcgttttcgatgtacttcttgtgaacgac
cacaagtttggcaacgagacgttgaaggtgcgccacgacaaccttcagactgtcttcact
cctgttaaagggaggatacacgtggtgccgaaaacggaggccaaaactatgcaagaggtg
gtgaacgccctcaacgaagccattgacaacagggaagagggcatcatggtgaaagatccc
tcatccgtctacaagcccgataagcgaggtgagggctggctcaagataaagccggagtac
gttgatggcttgatggatgagctcgacctgttgattgtcggaggctactggggaaaagga
aggcgaggtggcatgatgtctcatttcctcgtcgcggtggccgaagccccgaagcctgga
gagaaaccctctgtcttccacacgctctgtcgcatcggttccggctacaccatgaaggag
ctgtatgacttggggctcaagctggccaagcactggaaagtctaccggaagaacgaccct
cctgcctctattctgtgtgggacggagagaccggaagtctacattgacccgtgcaactcg
gtcatcatccaggtgaaggcagcagaaatagtcagtagtgacatgtacaaaaccaactgc
acgttacgcttccccaggatcgagaagatccgggaggacaaggagtggcaccagtgcatg
accctagctgagcttgatcagtttcgcaacaaggcgtccgggaagttgttctcgcgccac
ctcctcatcaatgacaatgacgggcctgaaaagaagaagcgcaagtcgccggcagcggcc
aagcccaagaaagctgtcggcgtcatcgaccacttcaagtcccaggacctatctggcgtc
accaaggagacggacatgttcgaggacgtggagttctgcgtgatgaatggcaacgaggcg
caccccaaggcggagctggagaaagcagtggcccgatgtggcggtattgtagtccagaac
ccgggaccggacacctactgtgtgatcgccgctgtggagaacatgcgtgtgaagaacctt
atctcttcagaccagcacgacgtggtgtgggctgcctggctgctggagtgcctagacagg
aggcaggtggtgccatggcaaccatgtcacatgatacacatgtcgccctccaccaaggag
cactttgccaaggaatacgactgctacggagacagctactttgtggacacggacgagcag
cagctgagggaagtcttcggtcggattggcagagcggacactttgacggcacagtgcatc
gctaagttggaggaacgctacagctgggacgacctccccactagcatgttcagacctttc
agggtctacatggacagatacgcagacataggagaccctaaaagcatcgtaccagcaact
tgtctggacacgcgggctctggaattccgcttccacggagggacagtagtgcagaagctc
gaggaaggggtctctcatgtcatagtggtggaggaaacaagagtgttggctttaagaacc
ctcagacgactctttaccaaaaagtttaagattgttagagagtcatgggtaacagagtct
atcaaagcagggtttttgcggaatgacaatgactacctagtgtga
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