Salvelinus fontinalis (brook trout): 129843035
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Entry
129843035 CDS
T11136
Name
(RefSeq) slit homolog 1 protein-like
KO
K06838
slit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129843035
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Axon guidance molecules
129843035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_1
Laminin_G_2
LRR_9
LRR_1
LRRNT
EGF_TEN
hEGF
LRRCT
LRR_14
EGF_Teneurin
EGF_CA
EGF_DL_JAG
EGF_3
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
129843035
NCBI-ProteinID:
XP_055767738
LinkDB
All DBs
Position
Unknown
AA seq
1573 aa
AA seq
DB search
MDMPRRSMAGAGSGGCGARLDHVVVARAGLWLLLWGCLLGAGGVEACPSLCTCVGATVDC
HGLGVRNIPKNIPRSTERLDLNGNNLTTISKTDFSGLKHLRVLHLMENQISNIERGAFDD
LKELERLRLNRNRLTQLPELLFQKNEALARLDLSENAIQAIPRRAFRGATDIRNLQLDKN
HITCIEEGAFRALRTLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNSLRCDCHLSWLS
PWLRQRPTLGLYTQCSSPPTLRGLNLAELQKNEFTCSGQSDSAFVQPCSLASGSCPPMCS
CSNNIVDCRGKGLTAIPAHLPEAMTEIRLEQNGIKSVPPGAFTSYKKLRRIDLSNNQISE
IAPDVFQGLRALNSLVLYGNKITDLPRGLFEGLGSLELLLLNANKIHCIRATAFQDLENL
ALLSLYDNKIQTLAKGTFTPLHSIQTLHLAQNPFVCDCNLKWLADYLRSNPIETSGARCA
SPRRLANKRIGQIKSKKFRCSAKEQYHIPGTEDTRLNNECNSKPVCPAKCRCEANVVDCS
NLRLTNFPQHLPASTTELRLNNNDISVLEATGVFKTLSQLKKINLSNNKISEIEDGVFEG
AGSVVELHLTANHLDSVRGTMFRGMGGLRMLMLRNNRISCIHNGSFTGLTNVRLLSLYDN
QLHTIMPGAFDTLPNLSTLNLLANPFNCDCRLAWLGAWLRSRRIVTGNPRCQSPSFLREI
PLQDVAAPDFRCDDVLEESSCAARPQCPSECTCTETVVRCSNKHLQALPKGLPRNVTELY
LDGNQFSMVPRELSTFKHLQLVDLSNNRISSLSDSSFSNMSQLTTLILSYNSLRCIPPLA
LAGLRSLRLLSLHGNDISELLEGIFSDVASLSHLAIGANPLYCDCHLRWLSDWVKSGYKE
PGIARCAGPMGMEGKLLLTTPETKFECLGPVETSVQAKCSPCVSGPCQNHGVCQSDPVEL
YTCVCAPGFTGKYCETPVDVCASNPCTNGGTCISDEQTRRFSCSCLVGFHGSFCEVDVDD
CEDHGCENGATCVDGVGNYTCFCPPFYIGLLCEEEEDVCSPGRNPCQQHSTCSSTTTGPR
CVCAPGFVGGDCSVNYDECEDQDCQNGAVCVDQVDGYTCTCPQGYSGELCEVPPPPPSPC
ERARCQNSAPCVDRGGTALCQCLPGFEGVRCEKLVSVNFVNRDSYLQLSDLKNWPQANIT
LQVSTAEDNGILLYNGDNKPMAVELHEGHVRVSYDPGSQPGHTIYSAETVNDGRFHTVEL
VTFDRMVNLSVDGGAPTTLDSLGGVPPLSGEAPLYVGGMPEKMSYSSLSLFQPLNSSSFH
GCIRNLYINHELQDFTQTTMKPGVVPGCQPCRKLFCLHGVCQPDGAQGPLCHCQPDWGGL
HCDQPIGGGLVGGDVAPATTANPCQGNKCVRGVCVVQDVQSYRCECEEGWRATLCNQQGE
LTAPAVPEGPAKPCSVLLCQHGHCQLTEGGATYCLCDTGYTGDTCDTVESACRGEAVRDF
HRVTRGHADCQTTRPFSWVECWGGCQGGRAAAGGACCAPLRVRRRRYTFECNDGSSFTQD
VEKAVECGCKECV
NT seq
4722 nt
NT seq
+upstream
nt +downstream
nt
atggacatgccaaggagatccatggctggagccgggtcagggggctgtggagccaggcta
gaccacgttgtggtggcccgagctgggctgtggctgctgctgtgggggtgcctgctgggg
gctggcggggtggaggcatgcccttctctgtgtacctgtgtgggagccacggtggactgc
cacggcctgggggtccggaacatccccaagaatatccccaggagcacagagagacttgat
ctaaatgggaacaacctgacgaccatcagcaagacagacttctctggcctcaaacacctc
agagttcttcacctgatggagaaccagattagcaacattgagagaggagcatttgatgat
ctgaaggaactggagagacttcgtctgaacaggaaccgtctcactcagctccctgaactg
ctgttccagaagaatgaggctctggctcgactggacctgagtgagaatgctatccaagcc
attcccaggagagctttcagaggggccacggacatcaggaaccttcaactggataagaac
cacatcacgtgcatcgaagagggggccttccgcgctctgagaaccctggaggttctcaca
ttgaacaacaacaacataagcagcatcccagtctccagcttcaaccacatgcccaaacta
cgcacctttcgtctccactctaacagtctgcggtgtgactgtcacctgtcctggttgtct
ccctggctgagacagaggcccaccctgggtctgtacacacagtgcagctcccctccaacc
ctcaggggactcaacctggctgaactgcagaagaacgagttcacctgctcaggtcagagt
gacagtgcgtttgttcagccgtgtagtctggcgtctggctcctgtcctcccatgtgttcc
tgtagtaacaacatcgtagattgtagaggcaagggcctcactgccatacctgctcacctg
cctgaagccatgaccgagattcgtctggagcagaatggtatcaagtcagttcctcctgga
gccttcacctcctacaagaagctgcgcagaatagatctgagtaacaatcagatatcagag
attgctcccgatgttttccaaggcctgagagccctcaactcactggtcctgtatggtaat
aagatcacagatctccccagaggactgtttgagggactcggctctctagaactgcttctc
ctgaatgccaataagatccactgtattcgagccacagccttccaggacctggagaatcta
gctctgctgtctctctacgacaacaagatccagaccctggctaaaggaaccttcacaccc
ctacacagtatacagacacttcacctggctcagaacccatttgtgtgtgactgtaacctg
aaatggctggcagactacctgaggtccaaccccatagagaccagcggtgcccgctgtgcc
agcccacgcagactggccaacaaacgcatcgggcagatcaagagcaagaagttccgctgc
tctgctaaggagcagtaccacatcccaggtacagaagacacccgtctgaataatgagtgt
aacagtaagccggtgtgtcctgctaagtgtcgctgtgaagctaacgtagtggactgctct
aacctccgtctcaccaacttcccccaacacctacctgcctctaccaccgagctgcgtctc
aacaacaatgacatctcagtgctggaagccaccggcgtcttcaagaccctctctcagctc
aagaaaattaaccttagcaacaacaagatctcagagatcgaggacggagtgtttgagggg
gcggggtctgttgtggagctccacctgacagccaatcacctggactctgtcagagggact
atgttcaggggcatgggcggcctccgcatgctgatgttgaggaacaaccgtatcagctgt
atccataacggcagcttcactggtctgaccaacgtccgcctgttgtctctctatgacaac
cagctccacaccataatgcctggggccttcgacacactgcccaacctctctacactgaac
ctgttggccaacccgtttaactgtgactgtcgtctggcgtggttgggggcgtggcttcgt
tctagacgaatcgtaacggggaaccctcgctgccagagcccctccttcctcagagagatc
ccactacaggacgtagcagcaccagacttccgctgcgacgacgtgttggaggagagtagc
tgtgcagctcgtcctcagtgtcccagtgagtgtacctgtacagagacggtggtccgctgt
agtaacaaacacctccaggccctgcccaaggggttgcctcgcaacgtcactgaactgtat
ctggatgggaaccagttcagcatggtgcccagagaactgtccaccttcaaacacctgcag
ctggtagatctgagtaacaacagaatcagctccctgtctgactcctccttctccaatatg
agccagctcaccaccctcatcctgagttacaactctctacgctgcatccctcctctggcc
ctggctggactacgctctctcagactactatctcttcatggcaacgacatctctgaacta
ctggaggggatcttcagtgatgtggcctccctgtctcacctggcaatcggtgccaacccc
ctgtactgtgactgtcatctgcgctggttgtctgactgggtgaagagtgggtacaaggag
cctggtatcgcccgctgtgccggaccaatgggcatggagggaaaactgctgctcaccaca
cctgagaccaagtttgaatgtctgggtccagtggagacgtctgtccaggctaagtgtagt
ccatgtgtgtctgggccctgtcagaaccacggtgtgtgtcagtctgaccctgtagaactc
tacacatgtgtgtgtgcacccggcttcacgggtaaatactgtgagactccagtggatgtg
tgtgccagtaacccatgcacaaatggaggaacctgcatcagtgacgaacagacaaggaga
ttcagttgttcatgcctggtgggtttccatggatcgttctgtgaggtggatgtagatgac
tgtgaggaccacggatgtgagaatggcgcaacctgtgtggacggagtaggcaactacacc
tgcttctgtcctcccttttacatagggttgttgtgtgaggaagaggaggatgtgtgttct
cctggtagaaacccctgtcagcaacactctacctgcagcagcaccactacaggccccagg
tgtgtgtgtgccccaggcttcgtggggggtgactgcagtgtgaactatgatgagtgtgag
gatcaggactgtcagaatggagcggtgtgtgtggaccaggtagatggatacacctgcacc
tgccctcaggggtacagtggtgagttgtgtgaggtgccccctcctcctccatctccctgt
gagcgggctcgctgtcaaaacagcgccccctgtgtggacagaggcggtactgcgctgtgc
cagtgcctgccggggttcgagggtgtgcgttgtgagaagctggtcagtgtgaacttcgtg
aatagagattcttacctacagctgtctgacctgaagaactggcctcaggctaacatcaca
ctgcaggtgtcgacagcagaggataacggtatcctgctgtataatggagacaacaagcca
atggctgtggagctccatgagggacatgttcgagtcagctacgaccctggtagtcagcct
ggacacactatctacagcgctgagacggtgaacgacggtcgtttccatacggtagagctg
gtgacctttgacaggatggtgaacctgtctgtggacgggggtgcgcccaccactctggac
agtctgggaggggtcccacctctgtctggagaggcaccgctatacgtggggggtatgcca
gagaagatgtcctactcctctctgagtctcttccagcccctcaactcctccagtttccac
ggctgcatcaggaatctgtacatcaaccacgagctgcaggacttcacccagaccactatg
aagccgggggtggtgccaggatgccagccctgcaggaaactgttctgcctccatggagtg
tgccaaccggatggtgcccagggacccctctgccactgccagcctgactggggtgggcta
cactgcgatcagccaatcggaggaggccttgttgggggagatgttgccccggcaaccacg
gctaacccatgccaggggaataagtgtgtgaggggtgtgtgtgtggttcaggatgttcag
tcatacaggtgtgagtgtgaggagggctggcgcgccaccctgtgcaatcaacagggggag
ctaacagcaccagcagtgccagaaggaccagccaagccgtgttcagtgctgctctgccaa
catggccactgtcagctgactgagggaggagcgacctactgtctctgtgacacgggatac
accggggacacatgtgacacagttgagtcagcgtgccgcggcgaggcagtgcgtgacttc
caccgggtgacgcgcggccacgccgactgccagacgacgcggcccttctcctgggtggag
tgttgggggggctgccaggggggcagggcggcggccgggggtgcgtgctgcgccccactg
agggtacgacgccggcgctacaccttcgagtgcaacgacggaagttccttcacacaggac
gtagagaaagcagtggagtgcggctgcaaggagtgtgtgtag
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integrated database retrieval system
