KEGG   Salvelinus fontinalis (brook trout): 129853354
Entry
129853354         CDS       T11136                                 
Name
(RefSeq) lysine-specific demethylase 2B-like isoform X1
  KO
K10276  F-box and leucine-rich repeat protein 10/11 [EC:1.14.11.27]
Organism
sfon  Salvelinus fontinalis (brook trout)
Pathway
sfon03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:sfon00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    129853354
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sfon03000]
    129853354
   04121 Ubiquitin system [BR:sfon04121]
    129853354
   03036 Chromosome and associated proteins [BR:sfon03036]
    129853354
Enzymes [BR:sfon01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.27  [histone H3]-dimethyl-L-lysine36 demethylase
     129853354
Transcription factors [BR:sfon03000]
 Eukaryotic type
  Zinc finger
   CXXC CpG-binding proteins
    129853354
Ubiquitin system [BR:sfon04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   SCF complex
    Target recognizing subunit (F-box)
     129853354
Chromosome and associated proteins [BR:sfon03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    129853354
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.1)
     129853354
SSDB
Motif
Pfam: PHD_4 zf-CXXC F-box-like F-box PHD LRR_At1g61320_AtMIF1 Viral_cys_rich
Other DBs
NCBI-GeneID: 129853354
NCBI-ProteinID: XP_055775273
LinkDB
Position
4:22377192..22398271
AA seq 780 aa
MALSLSADEEDYDSESEQQQEANRPKPKMGTSAAVKLPSNRSASGARRRRTRCRKCEACL
RTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLEEEDKF
NVMLMECSICNEIVHPNCLKVKDASGVVNDELPNCWECPKCNYAGKTGKVCKQKRGPGFK
YASNLPGSLLKEQKAVKEEGEATSTSTAKRKTEGGDISRHRPEEWEPLHRHPPVLTPSTL
PRPRPEDKLRKKRKLFDDDEEEDFSVRKKGKADEPLFPKLLHQIKTEEEDQEEEVDEEET
DSLFWRGLERRDRLGYTEDWAEDGDVKDTKTNFPRPSLKTPVLDSDQSHCSSPQAGPSSE
GGSEPQEKGPRPKARRKRRLPNKELGKALNQEIQKSEDCLANENRQPLKVEPESENEEPK
RGFCIGSDLGGERPHLRTKEMNGTPWELRHFYPSQITPLGFNRSSPGTRPLPPRSPPKCV
QMERHVIRPPPISPPPDRLPLVDGKTHAVQREVWMKLFGHFTHKELCVCMRVCKTWNRWC
CDKRLWTNIDLNRCKSITPLMLSGIIRRQPLSLDLSWTNISKKQLSWLINRLPGLRVLLL
SGCSWVAVSALCTSSCPLLRTLDVQWVEGLKDAQMRDLLSPPTDNRPGQLDNRCKLRNIL
DLRLAGLDITDASLRLIIRHMPVLSQLDLSYCNHINDHSVNLLTAAGTTTRDSLTEINLS
VCNRVTDHSLTFFKRCGSICHIDLRYCKQVTKTACEQFIAEMSVSVQFGLKEDKLLQKLS
NT seq 2343 nt   +upstreamnt  +downstreamnt
atggccttgtcactgagtgcagatgaagaggattatgattcagaatctgaacagcaacag
gaagccaaccggccaaagcccaagatggggacttcagcagcggtcaagctgccgtccaat
cgcagtgcgtctggtgccagacgcaggagaacacgctgccgaaagtgtgaggcgtgcctc
cgaactgagtgtggagaatgtcacttctgtaaagacatgaagaagtttggaggacctggg
cgcatgaagcagtcctgtatcatgaggcagtgcattgcacctgtcctgccccacacagct
gtgtgtgtggtgtgcggagaagcagggaaggaggacacattggaggaagaggacaagttc
aacgtcatgctcatggagtgctccatctgcaatgagattgtccaccccaactgcttaaag
gtgaaggatgcttctggcgtggtgaacgatgaacttcctaactgttgggaatgtcccaaa
tgcaactacgctgggaaaaccggaaaagtctgcaagcaaaaaaggggaccagggttcaag
tatgcgtctaacctccctggctccctgctgaaggagcagaaggcagtcaaggaggagggt
gaggccacatctacgtctacagccaagaggaagactgaggggggtgatatctcaagacac
agacctgaggaatgggagcccctccacagacacccccctgtcctgacccccagcaccctg
cctcggcccagacctgaggacaaactgaggaagaagaggaagctcttcgacgatgacgag
gaagaggacttcagtgtgaggaagaagggaaaggcagatgaacctctgttccccaaactc
cttcatcagatcaagactgaggaggaagaccaggaggaggaagtggatgaggaagagaca
gactctctgttctggcgaggcctggagaggagagatcgtttaggatataccgaggactgg
gcagaggacggggatgtcaaagacacaaagacaaactttccaaggccttctctcaaaact
cctgttctagacagtgaccagtctcactgcagctctccacaggctggccccagcagcgag
ggtggcagtgaaccccaggagaagggcccacgccccaaagcgcgccgcaaacgccgttta
cccaacaaggagctgggcaaagcactgaaccaggagatccaaaagagtgaggactgccta
gccaatgagaaccgccagcccctcaaggtggagccagagagtgagaatgaggagcccaag
aggggcttctgcatcggcagtgacctgggaggggagcgcccccacctccggaccaaggaa
atgaacggcaccccctgggagctgcgccacttctaccccagccagatcacccctctgggc
ttcaacaggagctcccctggcacccggcccctgcccccacgctccccacccaagtgtgtc
caaatggagcgccacgtaatccggccaccccccatcagccccccgccggacagactgccc
ctggtggatgggaagacccatgcggtgcagcgagaggtctggatgaagctctttgggcac
ttcacacacaaggagctgtgtgtctgcatgcgtgtctgcaagacatggaatagatggtgc
tgtgataaaagactgtggaccaacatcgatctgaaccgctgtaaatctatcactcccctc
atgctgagtggcatcatccgcagacagcccctctcactggacctcagctggaccaacatc
tccaagaagcagctgagctggctaataaaccgtttaccaggtctgcgggtgttgctgctc
tcagggtgctcgtgggtggctgtgtctgccctctgcacctctagctgccctctgctgcgc
accctggatgtgcagtgggtggaagggctcaaagatgcccagatgagggacctgctctcg
cccccgaccgataatagaccaggtcagttggacaaccgctgtaaactgaggaacatcctg
gacttgcgtctggctggactggacatcacagacgcctctttgcgtctgattatcagacat
atgccggtactttcacaactggacctgagctactgcaaccacatcaacgaccattcagtc
aacctgctgacggccgcagggaccacaaccagagattccctcacagagatcaacctgtca
gtttgtaatagggtgacagaccattcccttaccttcttcaagcgctgtggaagcatctgt
cacattgacctgcgctattgcaaacaggtgaccaagacggcttgtgaacagttcatagca
gagatgtctgtgagtgtacagtttggactcaaagaggacaaattactgcagaaactcagc
tag

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