Salvelinus fontinalis (brook trout): 129859823
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Entry
129859823 CDS
T11136
Name
(RefSeq) slit homolog 1 protein-like isoform X1
KO
K06838
slit 1
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
129859823
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfon00536
]
129859823
Glycosaminoglycan binding proteins [BR:
sfon00536
]
Heparan sulfate / Heparin
Axon guidance molecules
129859823
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
hEGF
Laminin_G_1
LRRNT
LRR_1
LRR_9
LRR_14
LRRCT
EGF_TEN
EGF_Teneurin
LRR_EndoS
EGF_DL_JAG
LRR_NXF1-5
EGF_3
Motif
Other DBs
NCBI-GeneID:
129859823
NCBI-ProteinID:
XP_055785948
LinkDB
All DBs
Position
1:complement(64888303..65095731)
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AA seq
1552 aa
AA seq
DB search
MPGRGACSGAGVGRLPGYWVCVLVLCALVTGYVRACPALCTCSGTTVDCHGLGIKTMPRN
IPRNTERLELNGNNLTRITKSDFSGLKYLRVLQLMENQIGAIERGAFDDMKELERLRLNR
NQLQQLPELLFQKNPALSRLDLSENNIQSIPRKAFRGATDIKNLQLDKNHIGCIEDGAFR
ALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLHCDCHLSWLAQWLRQRPTIGL
FTQCTAPAPLRGLNVAEIQKHEFTCSGHSESSGLQPCSLGGGSCPAMCTCSNNIVDCRGK
GLTAIPANLPDTMAEIRLEQNGIKSVPPGTFSPYKKLRRIDLSNNQISEIAPDAFQGLRS
LNSLVLYGNKITELPKGVFDGLYALQLLLLNANKIHCVRANAFTDLQNLSLLSLYDNKIQ
TVAKGTFASLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKRIG
QLKSKKFRCSGTEDVRLNNECNSDPVCPPKCRCESNVVDCSNLRLNKIPEHIPSSTTELR
LNNNDISTLEAVGVFKTLSQLKKINLSNNKITEIEDGVFEGAGSVNELHLTANQLDSVRS
GMFKGLEGLRMLMLRNNKISCIHNNSFTGLYNVRLLSLYDNQLTTITPGAFDTLQTLSTL
NLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVAVPDFRCEEGVEET
SCVPRPQCPSECTCLETVVRCSNKHLRALPKGIPRNVTELYLDGNQFSVVPKELSTFKYL
QLVDLSNNKINSLTNSSFSNMSQLTTLILSYNSLRCIPSLAFGGLRSLRLLSLHGNEISE
LPDGIFSDVASLSHLAIGANPLYCDCRLRWLSDWVKTGYKEPGIARCAGPTGMEGKLLLT
TPAKKFECHGEVDSGVLAKCNPCLSSPCVNQGICHSDLVEIYRCSCPPGFKGRNCETALN
VCVSNPCANGGTCQLNEEEEGAYSCACPLGFEGPTCQTNMDDCEDNDCENGANCVDGVNN
YTCLCPPYYTGEMCEEMEDVCAPGVSPCQHQSTCLISSTGPQCVCSPGYVGDDCSVDYDD
CEENRCQNGAQCVDQLNGYSCSCPDGYSGQLCEVPTSPRSLCDLADCQNDAPCVERAGRA
LCQCLPGFGGPRCEKLVSVNFVDRDSYLLLSDLKNWPQANITLQVSTAEDNGILLYNGDN
DHIAVELFQGHVKVSYDPGSLPGHAIYSTETINDGQFHTVELVTIDQMVNLSIDGGLPTT
MDSLRGVRPLNGEAPLYVGGRGPLQNTPTSSSSAAGMPVDVHSAAFRLWQIQNGSSFHGC
IQNLYINNELQDFTKTQMKPGVVPGCEPCRKIYCLHGICQPDGAQGPVCHCQPGWNGPHC
DQPATNPCQGSKCVHGKCIPLDLQSYRCECVEGYRGALCNQQGELFNPCRSHNCKHGRCQ
ISDTGEAYCHCEAGYTGELCDADQEVIQPKPTTESECRGEPVRDFYQVQRGYTICQTTRM
VSWVECSGACDTGACCASQRMKRRKYTFECSDGTSFSEEVEKTIKCGCVGCM
NT seq
4659 nt
NT seq
+upstream
nt +downstream
nt
atgcccggtagaggagcttgttctggggcaggcgtggggaggttgcctgggtactgggtg
tgtgtgctggttctctgtgccctggtgacaggctatgtcagagcgtgccctgccctgtgt
acctgcagtggcaccacggtggactgccatgggctgggcatcaaaaccatgccccggaat
ataccccgcaacacagagagactggagctgaatgggaataacctcacacgcatcaccaag
agtgacttctctggactcaagtacctccgtgtgctacagttgatggagaatcagattgga
gcgatagagcgtggagcgtttgatgacatgaaggagctggagagactgcgcctgaatagg
aaccaactgcagcagcttccggaacttctgtttcagaagaaccctgcactttcacgtcta
gatctgagtgagaacaacatccagtccatccccaggaaggctttcagaggagctacagac
atcaagaaccttcagttggataagaaccacattggctgcatcgaggacggagccttcaga
gcactgaggggcctggaagtactgactctgaacaacaacaacatcagcagcatcccagtc
tccagcttcaaccacatgccaaaactacgtaccttccgtctccactccaacaatctgcac
tgtgactgtcacctctcctggttggcccagtggttaagacaaaggcctacaattggtctg
ttcactcagtgtacagctccagccccgcttagaggactcaacgtggccgagatacagaaa
catgagtttacctgctcaggtcactcagagagctccggcttgcagccctgcagcctagga
ggaggttcgtgccctgccatgtgtacctgtagtaacaatattgtggactgcagaggaaaa
ggcctcacagctataccagccaaccttcctgacaccatggctgagattcgtctggagcag
aatgggatcaagtcagttcctcctggaaccttctctccatacaagaagctgcgcaggata
gatctcagtaataaccaaatatcagaaatagctcctgatgctttccagggtctgagatcc
ctcaactcactagtcctatatgggaataagatcacggagcttcccaaaggagtgttcgac
ggactatatgccctgcaactactgttgttgaatgccaataagatccactgtgttcgggcc
aatgccttcacagacctgcagaatctctctctactgtctctgtatgacaacaagatacag
actgtggccaagggcaccttcgcatccctcagagctatacagacgcttcacctggcccag
aacccgtttatctgtgactgtaacctgaagtggctggcagactacctgcgctccaaccca
atagagaccagcggtgcccgctgtgccagccccagacgtttggccaacaaacgcatcggg
cagctcaagagcaagaagttccgctgctctggcaccgaggacgttcgtctaaataatgag
tgtaacagtgatccagtctgtcctcctaaatgtcgctgtgagtccaacgtggtggactgc
tccaacctacgtctcaataagataccagaacacatcccttcctctaccactgaacttcgt
ctgaacaacaatgatatcagtacactggaggctgtaggagtcttcaagaccctctctcag
ctcaaaaagattaaccttagcaataataagatcacagagatcgaagatggggtgttcgag
ggggcggggtcagtcaatgagctccacctcaccgccaatcagctggactctgtccgcagt
ggaatgttcaagggactggagggactacgcatgctaatgttgaggaacaacaagatcagc
tgtatccataacaacagcttcactggcctgtacaacgttcgcctgttgtctctctatgac
aaccagctaactaccatcacccctggagccttcgacaccctgcaaacactgtctacactt
aacctccttgctaactccttcaactgtgactgtcgtctggcctggcttggtgattggctg
agaagcaggaagatcgtcacgggcaaccctcgatgccagcgccccgccttcctcaaggag
atcccactacaggacgtggcagtccctgacttccgctgtgaagagggtgtggaggagacg
agctgtgtgcccaggcctcagtgtcccagtgagtgtacttgtctggagaccgtagtacgc
tgcagtaacaaacacctccgtgcgctgcccaaaggcatccccagaaacgtcaccgagctg
tatctagatgggaaccagttcagcgtggtgccaaaggaactgtctaccttcaaatacctc
cagttagtagacctgagtaacaacaagatcaactctctaaccaactcttcattctccaac
atgagtcagctcaccacactgatcctgagttacaactctctgcgctgcatccccagtctg
gcctttggtggactacgctctcttcgactactgtctctccatggcaacgagatctccgag
cttcctgacggcatcttcagtgacgtggcctctctgtctcacctggcaattggtgccaac
cctctgtactgtgactgccgtttacgctggctgtctgattgggtgaagacgggatacaag
gagcctggcatcgcccgctgtgccggaccgacgggcatggagggcaagctgctgctcacc
acccctgccaagaagtttgagtgccacggtgaggtggacagtggcgtcctggccaagtgt
aacccgtgcctgtccagtccgtgtgtcaaccaggggatctgtcacagtgatctggtggag
atttacaggtgcagctgtcctcctggattcaagggtaggaactgtgagactgctctgaac
gtctgtgtcagtaacccctgtgccaatgggggcacctgccaactaaacgaggaggaggag
ggggcatacagctgtgcctgtccccttggttttgaaggtcctacctgccagaccaacatg
gatgactgtgaagataacgactgtgaaaacggagctaactgtgtagatggtgtcaacaac
tatacctgcctctgtcctccttactacaccggggagatgtgtgaggagatggaggatgtg
tgtgctccaggtgtcagtccgtgtcaacaccagtctacctgtctcatcagctctactgga
cctcagtgtgtgtgttctccgggctacgtcggtgatgactgcagtgtggactatgatgac
tgtgaggagaatcgctgtcagaacggagctcagtgtgtcgaccaactcaatggatactcc
tgctcctgccccgacggctacagtggtcagttgtgtgaggtgcccacctcaccgcggtct
ctatgtgacctggcagactgccagaacgatgccccgtgtgtggaacgggcaggccgggca
ctgtgccagtgtctccctgggtttggagggcctcgctgtgagaagctggtcagtgtgaac
ttcgtagacagagactcctacctgctgctctctgacctcaagaactggccccaggctaac
atcacactgcaggtgtcgacagcggaggacaacggtatcctgctgtataatggggacaac
gaccacatcgccgtagagctgttccagggtcacgttaaggtcagctacgaccctggcagc
ctgcctggacatgctatctacagtactgagacgatcaacgacggtcagttccacacggtg
gagctggtgaccattgaccagatggtgaacctgtccatcgacgggggtctccccaccacc
atggatagcctgaggggggtccggcccctcaacggggaggctccgctatacgtggggggt
aggggccctctccagaacacacctacttcctcctcctctgctgcaggtatgcccgtggac
gtccactcggcggcattccggctctggcagatccagaatggctccagtttccacggctgc
atccagaacctgtatatcaacaatgagctgcaggacttcactaagacccagatgaagccg
ggcgtggtgccgggctgtgaaccttgtaggaagatctactgcctgcatggtatctgccag
ccggacggggcacagggaccagtctgccactgccagccgggctggaacggaccccactgt
gaccagccggccaccaacccatgccagggcagcaagtgtgtgcatggcaagtgtattccc
ctggacctgcagtcgtaccgctgtgagtgtgtggagggttaccgtggtgccctgtgtaac
cagcagggggagctgtttaacccctgccgcagccataactgtaaacacgggcgctgccag
atctctgatacaggagaggcctactgccactgtgaggccggatacaccggagagctctgt
gatgcagaccaagaggtaatccagcctaaaccaactacagagtcagagtgtcgaggggag
cctgtgagggacttctaccaggtgcagcgtgggtacaccatctgtcagaccacacgcatg
gtctcctgggtagagtgctccggcgcctgcgacacaggtgcctgctgtgccagccagcga
atgaaacgccggaaatacacctttgagtgcagcgatggaacctcgttcagcgaggaagtg
gagaagaccatcaagtgtggctgcgtgggctgcatgtag
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