Salvelinus fontinalis (brook trout): 129868660
Help
Entry
129868660 CDS
T11136
Name
(RefSeq) platelet-derived growth factor receptor beta-like
KO
K05089
platelet-derived growth factor receptor beta [EC:
2.7.10.1
]
Organism
sfon Salvelinus fontinalis (brook trout)
Pathway
sfon04010
MAPK signaling pathway
sfon04020
Calcium signaling pathway
sfon04510
Focal adhesion
sfon04518
Integrin signaling
sfon04540
Gap junction
sfon04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
sfon00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
129868660
04020 Calcium signaling pathway
129868660
09133 Signaling molecules and interaction
04518 Integrin signaling
129868660
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
129868660
04540 Gap junction
129868660
09142 Cell motility
04810 Regulation of actin cytoskeleton
129868660
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
sfon01001
]
129868660
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
sfon04090
]
129868660
Enzymes [BR:
sfon01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
129868660
Protein kinases [BR:
sfon01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
129868660
CD molecules [BR:
sfon04090
]
Proteins
129868660
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Ig_PDGFR_d4
Pkinase
Ig_3
I-set
ig
Ig_2
V-set
VEGFR-1-like_Ig-like
C2-set_2
Motif
Other DBs
NCBI-GeneID:
129868660
NCBI-ProteinID:
XP_055798809
LinkDB
All DBs
Position
13:40221823..40245843
Genome browser
AA seq
1106 aa
AA seq
DB search
MWRGTLPRVLSIHTGTMELGLAKSLPLVAIFAVLLQFCPEGFSLELSPSEKEVTLSTNSS
FTVVCSGWSKVTWKSPHDPSLEGVAVEDRGTTSVLVLHNVTWRHSGNYICEEPSTEEAKD
ISVFVPDPEEWFLPLRQAVVMKEGEEGTIPCVVTDPGIDVTLYERDSKAPVEGTYHPSKG
FTAILKDSSYICRGAMNGEEKASQVYYVYSIVVPKSMNAFMTLSKTVLKQGEALMVNCTV
EEAEMVYFEWDFPRKETIEPLTDFLSEIRIRSFLNISSVTLEDSGQYICRVQDSFAGKSA
MDNLTVTVLERGFVDLEPSIDANVSALQYQSVELTVQIEAYPKPQVLWTRDNTTLTGETV
SMDTRQVHETSYLSTLTLVRVRMEQRGLYTVRVANEDDVKEITFDLQVTSSPKIIDLSDQ
HMDQGHGVLCVTEGVPTPTIHWYSCESIGKCSNKTTAWKSLSADQENVSIQMNVSYIEAS
GVNHVRSLLTFQTMGGITSVRCEARNERGRRAWDIKLVSNSLFSQVAVLAAVLALVVIAV
IFLVILIALWRKKPRYEIRWKVIESVSSDGHKYTYMDPMHLPYDCVWEVPRDSLVLGHTL
GSGAFGRVVEATAYGLGHAQSTTKVAVKMLKSTARTSETQALISELKIMSHLGPHLNIVN
LLGACTKRGPIYLITEYCCYGDLVDYLHRNKHNFLQYYADKNRRDADMCRNSTESPVQIQ
GKSESDGGYMDMTKEDSLNYVPMQELSDKIKYTDIEPSVNETPYHQDNNYQGQGQERADV
ALSISDSPILSYTDLVGFSYQVANGMDFLASKNCVHRDLAARNVLICEGKLVKICDFGLA
RDVMNDSNYIAKGNTFLPLKWMAPESIFQNLYTTLSDVWSFGILLSEIFTLGGTPYPDIP
MNEQFYTALKRGYRMPKPAHATDEIYDVMCKCWDEQFKKRPLFSSLVNLMGNLLTDAYKK
KYTQVNESFLKGDHHAAIRSKPIPAGNPAVSSGDHSSGDRAGQETGEIEETGKEAGPSQT
DYIIAIPDIHVAEEAEAGGEVLDTATQSTSSPPSTTDQTDTDTASLDGPEASLEEPVPTE
EEVPPPTQEDKLPQSPCTPEVEESFL
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtggagaggaactctcccaagagtgttatcaattcacactggcactatggagttgggc
ttggcaaagtctctgcctttggtggccatctttgcagtgctgctgcagttttgtccagag
ggcttcagtctggagctcagccccagtgagaaggaggtcacactgagcaccaactcctcc
ttcacggtggtctgttctggttggagcaaggtgacctggaagtctccccacgaccccagc
ctggagggagtggctgtggaggacaggggaacaaccagtgtgctggtcctccacaacgtc
acctggaggcactctgggaactatatctgtgaagagccctctacagaggaggccaaggac
atatcggtgtttgtaccagacccggaggaatggtttcttcccctgcgccaagcagtagtg
atgaaggagggagaggaaggtaccattccctgcgtggtgactgaccctggcattgacgtg
accctgtacgagagggacagcaaggcccccgtggagggaacataccaccccagtaaaggg
ttcaccgccatcctgaaagatagctcctacatctgccgaggtgccatgaacggagaggag
aaggcgtcccaggtgtattatgtctacagcattgtggtccccaaatctatgaacgccttc
atgacactctcaaagactgtgctgaaacaaggcgaggctttaatggtcaattgtactgta
gaagaagcagagatggtttacttcgaatgggattttcctcgcaaagagacaattgagcca
ctgacagactttctatcggagattagaatccgctccttcttgaacatctccagtgttact
ctggaggactctggccagtacatctgtcgagtgcaggactctttcgccggaaagtcagcc
atggataatctcactgtcactgttctggaacggggctttgtggatctggaaccctccatc
gacgccaatgtttcagcgctccagtatcagagtgttgagctcacagtgcagattgaagcg
tatcccaaacctcaggtgctctggaccagagacaacaccacccttactggggaaactgta
tccatggacaccagacaggtgcacgagaccagttacctcagtactctgaccttggtaagg
gtcaggatggaacagaggggcctctacactgtccgggtggccaatgaagatgacgtcaag
gagataacctttgatcttcaagtcacgtcttccccgaagataatagatttgtctgaccag
catatggaccagggccacggtgtgctctgtgtcacagagggggtccccacacccaccatt
cactggtacagctgtgaaagcattggaaaatgcagtaataagaccacagcatggaagtct
ctgtcggctgaccaggagaacgtcagcatccagatgaacgtgagctacatcgaggcctca
ggggtcaaccacgtccgcagccttttgaccttccagaccatggggggtatcacatcagta
cgctgtgaagcccgcaatgagagagggcgcagggcctgggacatcaaactggtctcgaac
tctcttttctcccaggtggctgtcttggctgcagtgttagccctggtggtcattgccgtc
atcttcctcgtcatcctcatcgccctttggagaaagaagccccggtatgagatccgttgg
aaggtgatcgagtcagtcagctcagatggccataagtacacctacatggaccccatgcac
ctgccatatgactgtgtatgggaggtgccccgggacagcctggtcctgggtcacactctg
ggttctggagcatttgggagggtcgtggaggccacagcctatggccttggtcacgctcag
tccaccaccaaagtggctgtgaagatgctcaagtccacagcaaggacaagtgagactcag
gctctgatatctgagctgaagataatgagtcaccttgggccccatctaaacatcgtcaac
ctactgggggcttgtacgaaacgaggtcctatctacctcataactgagtactgttgctat
ggtgacctggttgactaccttcaccgcaacaagcacaacttcctgcagtactacgcagac
aaaaaccgcagggatgctgatatgtgcaggaacagcacagagagtccagtccaaatccaa
ggaaaaagtgagagtgatgggggttacatggacatgaccaaggaagattctttaaattat
gtcccaatgcaagagctgagtgacaagatcaagtatacagacatcgagccttcagtcaat
gagacaccctaccaccaggacaacaactaccaaggacaaggccaagagagagcagacgtc
gcgttgtctatcagtgactccccaattctgagctacacagatctggtgggctttagctac
caagtggctaacggcatggactttctggcatccaagaattgtgttcatcgtgacctggct
gccagaaacgttctcatctgcgagggaaagctggtgaagatctgtgactttggcctggcc
cgtgacgtcatgaacgactccaactacatagccaaaggcaacacattcctgccactgaag
tggatggctccagagagtatcttccagaacctctacacaaccttgagcgatgtttggtct
tttggcattctgctttcagagatctttactctaggaggaacgccctatcctgacattccc
atgaatgaacagttctacactgccttgaagagaggctacaggatgcctaagcccgctcat
gctacagacgagatctatgacgtcatgtgcaagtgttgggatgagcaattcaagaagagg
ccactgttctcctctctggttaatttgatgggaaacctgctgactgatgcttacaaaaag
aaatacacccaggtgaatgagagctttctgaagggcgaccaccacgctgcaatcaggtcc
aaacccataccagcagggaacccagctgtgtcttcaggtgaccactcctcaggggatcga
gcgggtcaggagacaggggagatagaggagactgggaaggaggctggcccctcccagact
gactacataatcgccatcccagatatccatgtagccgaagaggcagaagcaggtggtgag
gtgctggacaccgccacacagagtacatcaagtcctccaagcacaaccgaccagactgat
acggatacagcctccctggatggaccagaagcatccctagaagaaccagtacccacagag
gaagaggtgcctccccccacgcaagaagacaagctcccccagtctccatgtacccctgaa
gtggaggagagtttcctgtag
DBGET
integrated database retrieval system
