Siminovitchia fortis: QNH23_11705
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Entry
QNH23_11705 CDS
T09068
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfor
Siminovitchia fortis
Pathway
sfor03030
DNA replication
sfor03410
Base excision repair
sfor03420
Nucleotide excision repair
sfor03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
QNH23_11705 (ligA)
03410 Base excision repair
QNH23_11705 (ligA)
03420 Nucleotide excision repair
QNH23_11705 (ligA)
03430 Mismatch repair
QNH23_11705 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfor03032
]
QNH23_11705 (ligA)
03400 DNA repair and recombination proteins [BR:
sfor03400
]
QNH23_11705 (ligA)
Enzymes [BR:
sfor01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
QNH23_11705 (ligA)
DNA replication proteins [BR:
sfor03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
QNH23_11705 (ligA)
DNA repair and recombination proteins [BR:
sfor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
QNH23_11705 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
QNH23_11705 (ligA)
MMR (mismatch excision repair)
DNA ligase
QNH23_11705 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
QNH23_11705 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
BRCT_2
5_3_exonuc
Mustang
CDT1_C
Motif
Other DBs
NCBI-ProteinID:
WHY80602
LinkDB
All DBs
Position
complement(2283756..2285762)
Genome browser
AA seq
668 aa
AA seq
DB search
MDRETAQNRVKELHNLINQYNYEYHVLDNPSVPDAEYDRLMRELTEIESEFPDLVTPESP
TQRVGGEALSAFEKVEHRTPMLSLANAFGEASLRDFDRRIRQAIGDDFTYVCELKIDGLA
VSLQYEDGLFVLGSTRGDGTVGENITANLKTIRSIPIRLKEDLTFEVRGEAYMPRKSFER
LNKEREKKGEMLFANPRNAAAGSLRQLDPRIAASRHLDIFLYGIGNYGSLGVDTHSGALE
YLAKLGLKVNKEWRKCQTIDDVIEYIDTWTEKRPDLDYDIDGIVIKVDSIEQQDRLGFTA
KSPRWAIAYKFPAEEVVTRLTDIELSVGRTGVITPTAILEPVQVAGTTVQRASLHNEDLI
REKDIMLGDWVIVKKAGDIIPEVVNVLTERRTGEETVFHMPTHCPACDSDLVRLEGEVAL
RCINPKCPAQRREGLIHFVSRNAMNIDGLGEKVIGQLFEHELIRDPADIYFLKKEQLLEL
ERMGEKSVNNLLAAIEKSKSNSLEKLLFGLGIRHVGERAAKVLAEHYETMDNLIAASRDD
LVTIPEVGEKMSDSIATYFESEEVEELISELKSAGVNMTYKGPRISEAAESGSIFSNKTV
VLTGKLEKLTRNEAKEKIEALGGQVTGSVSKKTDLVIAGEDAGSKLTKAQELNIEIWDEE
KLLEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgtgagactgcccaaaaccgggttaaagaactgcacaatttaataaaccaatat
aactatgaataccatgttctggataatccgtctgtcccggatgcagaatatgaccggctg
atgcgtgaattgacggagatcgaaagtgaatttccggatttggtgacgccagagtcaccg
actcagcgggttggcggagaagctctttccgcttttgaaaaagtggaacacagaacgccg
atgctcagcctcgccaacgcttttggggaagccagtttgcgggattttgaccgccgcatc
cgccaggcgatcggggacgattttacctatgtatgtgagttgaaaatcgacgggcttgca
gtctcacttcaatatgaagacggactcttcgtattgggatcgaccaggggagacggaact
gtcggcgagaatattacagctaatttaaaaacaatccgttccatcccgatccgcctgaaa
gaggatttgacctttgaagtacgcggtgaagcatacatgccgagaaaatcatttgagcgc
cttaacaaggaaagggaaaagaaaggcgaaatgctgtttgccaatccgaggaatgcggca
gcgggctctttacgccagcttgacccgaggattgctgcatcccggcatctcgacatcttc
ctttacggaattggaaattacggatcccttggtgtcgatacacacagcggcgcactcgaa
tacttggcgaagctcggcttgaaggtgaacaaggaatggagaaaatgccaaacgatcgac
gatgtgattgagtatatcgacacatggacggaaaaacggcctgacctggattatgatata
gacggaatcgttataaaagtcgattctatagagcagcaggaccgtcttggttttacagca
aagtcgccccgttgggccatcgcctacaagttccctgccgaagaagtggtgacaaggctg
acggacatcgaattgagtgtaggcaggaccggcgtcatcacgccgaccgctattctggaa
ccagttcaggtggccggtacaactgtccagcgtgcatccttgcataatgaagatttaatc
cgcgaaaaggatattatgcttggggactgggttatcgtcaaaaaagccggtgatatcatt
ccggaagttgtcaacgttttgactgaaagacggacaggcgaagaaacagtgttccacatg
ccgacacattgccccgcgtgcgacagcgatcttgtgcgcctggaaggggaagtggcgctg
cgctgcatcaatccgaaatgtccggcgcagcgaagagaagggctgatccacttcgtttca
cgcaacgcgatgaatattgacggccttggagaaaaggtgattggccagctgtttgaacat
gaattgattagggatccagctgacatatatttcctaaaaaaggagcagctgcttgagttg
gagaggatgggtgaaaaatccgtcaataatttgctggcggcgattgaaaaatctaaatcc
aactcccttgagaagttgttatttggactggggatccgccatgtcggggaacgcgcggca
aaggttttggccgaacattatgaaacgatggacaacctgatcgcggcttcccgcgacgat
cttgtaacgattcctgaagtgggagaaaaaatgtcggattcgattgccacttattttgaa
agcgaagaagtagaggaactgatctctgaattgaaatcggccggtgtcaatatgacgtac
aagggaccaagaatttcggaagcagcggaatccggttcgatttttagcaataaaacggtt
gttttaacaggcaaactcgagaaactgacgcgaaatgaagccaaagagaagattgaagcg
cttggcggacaagttacgggcagtgtcagtaaaaagacggacttggtcattgcaggagag
gacgccggatcgaagctgacaaaagcgcaggaactgaatatagaaatttgggatgaggaa
aagctcctggaagaactcaatcgttaa
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integrated database retrieval system
