Syntrophobacter fumaroxidans: Sfum_1428
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Entry
Sfum_1428 CDS
T00418
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfu
Syntrophobacter fumaroxidans
Pathway
sfu03030
DNA replication
sfu03410
Base excision repair
sfu03420
Nucleotide excision repair
sfu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Sfum_1428
03410 Base excision repair
Sfum_1428
03420 Nucleotide excision repair
Sfum_1428
03430 Mismatch repair
Sfum_1428
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfu03032
]
Sfum_1428
03400 DNA repair and recombination proteins [BR:
sfu03400
]
Sfum_1428
Enzymes [BR:
sfu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Sfum_1428
DNA replication proteins [BR:
sfu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Sfum_1428
DNA repair and recombination proteins [BR:
sfu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Sfum_1428
NER (nucleotide excision repair)
GGR (global genome repair) factors
Sfum_1428
MMR (mismatch excision repair)
DNA ligase
Sfum_1428
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Sfum_1428
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
Nlig-Ia
DNA_ligase_ZBD
BRCT
HHH
PTCB-BRCT
HHH_3
UPF0758_N
Mustang
Motif
Other DBs
NCBI-ProteinID:
ABK17119
UniProt:
A0LI67
LinkDB
All DBs
Position
complement(1767269..1769353)
Genome browser
AA seq
694 aa
AA seq
DB search
MPAVLSYSFYDFLVEGVRAMPDREKAHARIEALREEIRHHNYLYYVLDRPEISDEAYDGL
FRELVRLEESYPALITPDSPTQRVGAAPAEKFLPFPHTIPMLSLENAMSEAEVFEFARRV
RKILGDRGDVDFMAEPKMDGLAVELVYENGELTGAGTRGDGYVGEDVTRNAKTIRAIPLK
LYAGAGGASPPARIAVRGEVYMDRKDFAALNRSREQAGEPLFANPRNAAAGSLRQLDPSV
TAARSLKAFFYGVGEVSGYRFKTQAQTLEQLRRWGLPVNPLSRVCPSIEDAVSFYNEIAA
GRDALPFEIDGVVVKVNSIEWQEMLGEKSRSPRWAIAYKFSPHQARTRVLDIKVQVGRTG
VLTPVAELEPVTVGGVTVRRATLHNQDEVERKDIRVRDQVMVRRAGDVIPEVVEVIGEAR
TGGEEVFQMPGQCPSCGSEVVRLPEEAVHRCLNRNCPAQIKASLRHFASRDAMNIEGLGK
NIVSMLVDRGIVESVSDLYRLSVETLEQLPGFAGKSSRNLVESIERSKKTNLADFLYALG
IYHVGSHVARLLAERFGTLDAVRRASVEELMSVNGVGEVVARSVVHYFSLPANRTLVESL
LSAGLEMAATEPEAGPVDAFWNGKTVVFTGALSSMTRSNAAALTASRGARVSDSVSRKTD
IVVAGADPGSKVEKARQLGITILDEREFLERLGM
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
gtgcctgccgtgttatcatattctttctacgactttcttgtcgaaggggtaagggcgatg
ccggaccgcgagaaagcacatgccaggattgaggccttgagggaggaaatccggcatcac
aactatctctattatgtcctcgaccgtccggaaatcagcgatgaggcctacgacgggctg
tttcgcgaactggtccgtttggaagaatcctacccggcgctcatcacgcccgattcgccg
acacagagggtgggggcggccccggccgagaaattcctgccctttccccatacgataccc
atgttgagtctcgagaacgcgatgtcggaggcggaagtcttcgagtttgcccgtcgggtg
cggaagatcctgggagacaggggcgacgtcgacttcatggcggagccgaagatggacggg
ctggcggttgaactggtctatgaaaacggtgagctgaccggtgccggcacccggggcgac
gggtatgtgggagaggacgtgacacgcaacgcaaagaccataagggcgattcccctgaag
ctctacgcgggtgcggggggggcttccccgccggctcggattgccgtccggggcgaagtc
tacatggacaggaaggactttgccgccctcaacaggagccgcgaacaagccggtgagccg
cttttcgcaaatccacgcaatgccgcggcgggatcgttgcgtcagctcgatccttcggtc
accgcggcgcgttcactgaaagcttttttctacggtgtgggagaagtgtcgggttatcgc
ttcaagacccaggcacagaccctggagcagctccgtcggtggggtcttcccgtcaatcct
ctgtccagggtctgcccgtccatcgaggatgccgtgagcttctacaatgagattgcggca
ggacgggacgctctgccttttgaaatcgacggcgtggtcgtgaaggtgaattccatcgag
tggcaggaaatgcttggtgaaaaatccagaagcccccgatgggccattgcgtataagttt
tcgccccaccaggcgcggactcgggtcctcgacatcaaggtgcaggtgggtcggaccgga
gtactgaccccggtggcggaattggagcccgtgacggtgggcggcgtcaccgtcagaagg
gcgactctgcacaatcaggatgaggtggagcgcaaagacattcgtgtgcgcgaccaggtg
atggtgcgccgcgcgggggacgtgattccggaggtcgtcgaggtcatcggggaagccagg
acgggtggtgaggaggttttccagatgcccgggcagtgcccttcctgcgggtcggaggtc
gtgcgcctgccggaagaagcggtccatcgctgtctgaatcgcaactgtccggctcaaatc
aaggcgtccctgcgtcattttgcgagccgggacgcaatgaatatcgaaggtctgggcaag
aacatcgtttcgatgcttgtggaccggggcatcgttgaatcggtgtcggacctctaccgg
ctgagcgtcgagacactggagcagctcccggggtttgccggaaagtcgtcccgcaacctg
gtcgaatcgatcgagagaagcaagaagaccaacctggcggatttcctctacgcgctcggc
atctatcacgtggggagccacgttgcccggttgctggcggagcgattcgggacgctcgat
gccgtacgccgggcttccgtggaggagctgatgagcgtcaacggcgtcggagaggtggtg
gccaggagcgtggtccattatttctcgcttcccgccaatcggacgctggtcgaaagcctg
ctgagcgcgggactcgagatggcggccaccgagcctgaagccgggccggtggatgcattc
tggaacgggaagacggttgttttcaccggcgcgctcagctcgatgacccgatcgaatgcg
gcggccctgacggcatcgaggggggccagggtgtccgacagtgtgagcaggaagacggac
atcgtcgtggccggtgccgatccgggatcgaaggtcgaaaaggcaagacagttagggatt
acgatcctggatgaaagggaatttctcgagcgactcgggatgtaa
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