Streptomyces fungicidicus: CNQ36_27690
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Entry
CNQ36_27690 CDS
T07133
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfug
Streptomyces fungicidicus
Pathway
sfug03030
DNA replication
sfug03410
Base excision repair
sfug03420
Nucleotide excision repair
sfug03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfug00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CNQ36_27690
03410 Base excision repair
CNQ36_27690
03420 Nucleotide excision repair
CNQ36_27690
03430 Mismatch repair
CNQ36_27690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfug03032
]
CNQ36_27690
03400 DNA repair and recombination proteins [BR:
sfug03400
]
CNQ36_27690
Enzymes [BR:
sfug01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CNQ36_27690
DNA replication proteins [BR:
sfug03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CNQ36_27690
DNA repair and recombination proteins [BR:
sfug03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CNQ36_27690
NER (nucleotide excision repair)
GGR (global genome repair) factors
CNQ36_27690
MMR (mismatch excision repair)
DNA ligase
CNQ36_27690
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CNQ36_27690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AYL38851
UniProt:
A0A494V675
LinkDB
All DBs
Position
6159170..6161365
Genome browser
AA seq
731 aa
AA seq
DB search
MAGDKQAETTSVPAEAREKHAKLAERIEEHRFRYYVNDAPVISDADFDRLLRELEALEEE
HPELRTPDSPTQKVAGAYETEFTSVEHRSRMLSLDNTFNDDDLAAWVERIHRELGTQKYH
FLCELKVDGLAVNLTYERGRLVRAATRGDGRTGEDITPNVRTIAEIPDRLTGDEVPDVVE
IRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGV
LEGYRGMTRLSQGYDLLRTWGLPTSPHNRVVDDLEGVREFIAYYGENRHSVAHEIDGVVV
KLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTRLVNIRVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMPAECP
ECGTPLRPMKEGDVDLRCPNARTCPAQLRERLFYLAGRKALDIEHFGYVAAAALTRPLEP
EEPPLRDEGDLFDLTVDQLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQEGEPRKNA
VAMLANIAAAKERPLARVLTSLSIRHVGPVAAEALAREFRSIDRIEQATEEELAATEGVG
GIIAASLKQWFAEDWHREIIRKWKTAGVRMEDERSGEDEGPRPLEGLTVVVTGTLENFTR
DGAKEALQSQGAKVTGSVSKKTAFVVVGDNPGSKYDKAMQLKVPVLNEDGFNVLLEQGPE
AAADVALSAEE
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaagcggagacgacgagcgtgccagccgaggcgcgggagaagcac
gccaagctcgctgagcggatcgaggagcaccgcttccggtactacgtgaacgacgccccc
gtcatcagcgacgccgacttcgaccggctgctgcgcgaactggaggcgctggaggaggag
caccctgagctgcgcaccccggactccccgacccagaaggtcgccggggcgtacgagacg
gagttcacctccgtcgagcaccgctcgcggatgctctccctcgacaacacgttcaacgac
gacgacctcgccgcctgggtggagcgcatccaccgggaactgggcacgcagaaataccac
ttcctgtgcgagctcaaggtcgacggactcgccgtcaacctcacctacgagcggggccgg
ctggtccgcgcggcgacccgcggcgacggccgcaccggtgaggacatcacgcccaacgtg
cgcaccatcgccgagatcccggaccggctgacgggcgacgaggtgcccgacgtcgtggag
atccgcggcgaggtctacttcccgatggagaagttccaggagctgaacgcccggctggtc
gaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgccag
aaggacccccgggtcaccgccacccgcccgctgcacatggtggtccacggcatcggcgtc
ctggagggctaccgcggcatgacccgcctctcccagggctacgacctcctcaggacctgg
ggcctgccgacctccccgcacaacagggtggtcgacgacctggagggcgtacgggagttc
atcgcgtactacggcgagaaccggcactccgtggcgcacgagatcgacggggtcgtcgtc
aagctcgacgagatcccgctccagggccgtctcggctccacctcacgcgccccccgctgg
gccatcgcgtacaagtacgcgcccgaggaggtcaacaccaggctggtgaacatccgcgtg
ggggtgggccgtacgggcagggtcacgccgtacgcgcaggtcgaaccggtgacggtggcg
gggtccgaggtcgagttcgccaccctgcacaaccaggacgtggtcaaggccaagggcgtc
ctcatcggggacacggtggtgctgcgcaaggccggtgacgtgatccccgagatcctcggg
cccgtcgccgacctgcgggacggcagcgagcgcgagttcgtgatgccggccgagtgcccc
gagtgcggtacgccgctcaggccgatgaaggagggcgacgtcgacctgcgctgccccaac
gcccgtacctgcccggctcagttgcgggagcggctgttctacctcgccgggcgcaaggcg
ctggacatcgagcacttcggctacgtcgccgcggccgcgctgaccaggccgctggagccg
gaggagccgccgctgcgggacgagggcgacctgttcgacctcaccgtcgaccagctgctg
cccatcaaggcgtacgtcctggaccaggacagcggtctgcccaagcgggacccgaagacc
ggcgaggagaagatcgccaccgtcttcgccaaccaggagggcgagccgaggaagaacgcg
gtcgcgatgctggcgaacatcgcggcggccaaggagcgtccgctggcccgcgtgctgacc
agtctgtcgatccgccacgtcggtccggtcgccgcggaggcgctggcccgtgagttccgc
tccatcgaccgcatcgagcaggccaccgaggaggagctggcggcgaccgagggcgtcggc
ggcatcatcgccgcctcgctcaagcagtggttcgccgaggactggcaccgcgagatcatc
cgcaagtggaagacggccggtgtccgtatggaagacgagaggtccggggaggacgagggc
ccgcgtccgctggaagggctcaccgtggtggtgaccggaaccctggagaacttcacccgc
gacggcgcgaaagaggcactgcagagccagggcgcgaaggtgaccggatccgtgtccaag
aagacggcgttcgtcgtcgtgggcgacaatcccgggtcaaaatatgacaaggcgatgcag
ttgaaggtgccggtcctgaacgaggacggcttcaacgtccttctggagcagggtccggag
gccgcggcggacgtcgcgctttcggccgaggagtag
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