Sorex fumeus (smoky shrew): 130016444
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Entry
130016444 CDS
T10594
Symbol
KDM2B
Name
(RefSeq) lysine-specific demethylase 2B isoform X1
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
130016444 (KDM2B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sfum03000
]
130016444 (KDM2B)
04121 Ubiquitin system [BR:
sfum04121
]
130016444 (KDM2B)
03036 Chromosome and associated proteins [BR:
sfum03036
]
130016444 (KDM2B)
Enzymes [BR:
sfum01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
130016444 (KDM2B)
Transcription factors [BR:
sfum03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
130016444 (KDM2B)
Ubiquitin system [BR:
sfum04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
130016444 (KDM2B)
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
130016444 (KDM2B)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
130016444 (KDM2B)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
F-box
Cupin_8
JmjC
AppA_SCHIC
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
130016444
NCBI-ProteinID:
XP_055963134
LinkDB
All DBs
Position
Unknown
AA seq
1340 aa
AA seq
DB search
MKEIKCRPVSSDLKRFWSGCFLNPFGFGSTSLSPGSLKVTPPGQRPIDRQRYDENEDLSD
VEEIVSVRGFSLEEKLRSQLYQGDFVHAMEGKDFNYEYVQREALRVPLIFREKDGLGIEM
PDPDFSVRDVKLLVGSRRLVDVMDVNTQKGTEMSLSQFVRYYETPEAQREKLYNVISLEF
SHTKLEHLVKRPTVVDLVDWVDNMWPQHLKEKQTEATNALAEMKYPKVKKYCLMSVKGCF
TDFHIDFGGTSVWYHVLRGGKIFWLIPPTLHNLALYEEWVLSGKQSDIFLGDRVERCQRI
ELKQGYTFFIPSGWIHAVYTPVDSLVFGGNILHSFNVPMQLRIYEIEDRTRVQPKFRYPF
YYEMCWYVLERYVYCVTQRSYLTQEYQRESMLIDAPRKASVDGFSSDSWLEMEEASCEQQ
PQEEKEEEEEEEEEEGEGTDQAPKLPADGRASPSSSPSEDQEAPGKKPKASALRLLKRTL
STESEESVRSPAAADCPRTPAGSPVPEVAARWAHLTEFELKGLKALVEKLESLPENKKCV
PEGIEDPQALLEGVKNVLKEHADDDPSLAITGVPVVSWPKKTPKNRAVGRPKGKLGPASA
VKLAANRTTAGARRRRTRCRKCEACLRTECGECHFCKDMKKFGGPGRMKQSCIMRQCIAP
VLPHTAVCLVCGEAGKEDTVEEEEGKFNLMLMECSICNEIIHPGCLKIKESEGVVNDELP
NCWECPKCNHAGKTGKQKRGPGFKYASNLPGSLLKEQKMNRDNKEGQEPAKRRSECEEAP
RRRSDEHPKKVPPDGILRRKSDDVHLRRKRKYEKPPELSGRKRASTLQTSPGSSHLSPRP
PLGSSLSPWWRSSLTYFQQQLKPGKEDKLFRKKRRSWKNTEDRMALSKPIRRFKQEPEDD
LPEAPPKTRESDHSRSSSPTAGPSTEGAEGPEEKKKVKMRRKRRLPNKELSKELSKELNQ
EIQKTENSLANENHQPIKSEPESESEEPKQLLGLCERPHRFSKGLNGTPRELRHQLGPGL
RSPPRLISRPPPSMSPPKCIQMERHVIRPPPISPPPDSLPLDDGAAHVMHREVWMAVFSY
LSHQDLCVCMRVCRTWNRWCCDKRLWTRIDLNHCKSITPLLLSGVIRRQPVALDLSWTNI
SKKQLSWLINRLPGLRDLVLSGCSWVAVSALCSASCPLLRTLDVQWVEGLKDAQMRDLLS
PPTDNRPGQMDNRSKLRNIVELRLAGLDITDASLRLIIRHMPLLSKLQLSYCNHVTDQSV
NLLTAVGTTTRDSLTEINLSDCNKVTDQCLSFFKRCGNICHIDLRYCKQVTKEGCEQFIA
EMSVSVQFGQVEEKLLQKLS
NT seq
4023 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaatcaaatgccgtccggtcagctcagatctgaaaaggttctggtctggctgc
ttcctgaacccgttcgggttcgggtccacttcgctgagtcccgggagtttaaaagtcacc
ccgcctggacagcgcccgatcgaccgccagaggtacgacgagaacgaggacctgtcggac
gtggaggagatcgtcagcgtccgcggcttcagcctggaggagaagctgcgcagccagctc
taccagggggacttcgtgcacgccatggagggcaaagatttcaactatgagtacgtgcag
cgagaagctctcagggtccccctgatcttccgagagaaggatggactggggattgagatg
cccgaccctgatttctctgtccgagatgtcaaactcctggtggggagccggcggctggtg
gacgtgatggacgtgaacacgcagaagggcacagagatgagcctgtcgcagtttgtgcgc
tactacgagacgccggaggcccagcgcgagaagctctacaacgtcatcagcctggagttc
agccacaccaagctggaacacttggtcaaacggcccactgtggtggatctggtggattgg
gtggacaacatgtggccccagcacctgaaggagaagcagacggaagccaccaatgccctg
gccgagatgaagtaccccaaagtgaagaagtactgtctgatgagcgtgaagggctgtttc
accgacttccacatcgacttcggcgggacgtccgtgtggtaccatgtgctccggggaggg
aagatcttctggctgatccccccgaccctgcacaacttggcgctgtacgaggagtgggtg
ctgtcgggcaagcagagcgacatcttcctgggggaccgcgtggagcgctgccagaggatc
gagctgaagcagggctacaccttcttcatcccttccggttggatccatgcggtctacacc
cccgtagactccctggtgttcggcggaaacatcctgcacagcttcaacgtgcccatgcag
ctgcgtatctacgagatcgaggacaggacgcgggtgcagcccaaattccgctaccccttc
tactatgagatgtgctggtatgtcttggagcgctacgtgtattgtgtgactcagcggtcc
tacctcactcaggagtaccagagagaatccatgcttattgatgccccacggaaggccagc
gtagacggcttctcatccgattcctggctggagatggaggaggcgtcctgcgagcagcag
ccccaggaggagaaagaggaggaggaagaggaggaggaggaggagggggagggcaccgac
caggcccccaagctgcctgccgatggccgcgcctcgccctccagcagcccctccgaggac
caggaggccccagggaagaagcccaaagcctcggccctgcgcctcctcaagaggactctg
tccaccgagtcggaggagagcgtgcggtcccctgccgctgctgactgccccaggacgcct
gctggctctcccgtgcccgaggtggctgcccgctgggcccacctcaccgagttcgagctg
aagggactgaaagcactggtggagaagctggaatccctccccgagaacaagaagtgcgtc
cccgagggcatcgaggacccccaggcactcctggagggcgtgaagaatgtcctgaaggaa
cacgcggatgatgaccccagtctggccatcactggggtccctgtagtctcttggccaaag
aagactccaaagaaccgagcggtgggtcggcccaaggggaagctgggcccggcctccgcc
gtgaagttggccgccaaccggacgacggcgggagctcgccggcgccggacgcgatgccgc
aagtgcgaggcctgcctgcggacggagtgcggagagtgccacttctgcaaggacatgaag
aagtttgggggccccgggcgcatgaagcagagctgcatcatgcggcagtgcattgcgcct
gtgctgccccataccgccgtgtgcctcgtgtgcggcgaggccgggaaggaggacacggtg
gaggaggaggaaggcaagttcaacctcatgctcatggagtgctccatctgcaatgaaatc
atccaccccggatgccttaagattaaggagtctgagggcgtggtcaacgatgagcttccc
aactgctgggagtgtccgaagtgcaaccacgccggcaagaccgggaaacaaaagcgtggc
cctggcttcaagtatgcctccaacctgccgggctccctgctcaaggagcagaagatgaac
cgggacaacaaggaagggcaggagcctgccaagcgcaggagcgagtgtgaggaggcgccc
cggcgccggtcagacgagcaccccaagaaggtgccccccgatggcatcctccgccggaag
tcggacgacgtgcacctgaggaggaagcggaaatacgagaagcccccagagctcagtggc
cgcaagcgagcctcgacgcttcaaacgtcccccggttcctctcacctctcgccgaggccc
cctctaggcagcagcctcagcccctggtggagatccagtctcacttacttccagcagcag
ctaaagcctggcaaagaggataagcttttcaggaaaaagcggcgatcctggaagaacacg
gaggaccggatggccctgtccaagcctatccggcgcttcaagcaggagcccgaagacgat
ctgccggaggcccccccaaagaccagggagagcgaccactcccgctccagctcccccacg
gccgggccgagcaccgagggggccgagggccccgaggagaagaagaaagtgaagatgcgc
cggaaacggaggcttcccaacaaggagctgagcaaggagctgagcaaggagctgaaccag
gagatccagaagacggagaacagcctggccaacgagaaccaccagcccatcaagtcggag
cccgagagcgagagcgaggagcccaagcagctgctgggcctctgcgagcgcccccaccgc
ttcagcaaggggctcaacggcaccccgcgggagctgcggcaccagctggggcccggcctg
cgcagcccccctcggctcatctcccggcccccgccctcgatgtccccgcccaagtgcatc
cagatggagcgacacgtgatccggccgccccccatcagccccccgcctgactcgctgccc
ctggacgacggggccgcgcacgtcatgcacagggaggtgtggatggccgtcttcagctac
ctcagccaccaagacctgtgtgtctgcatgcgggtctgcaggacctggaaccgctggtgc
tgtgataagcggttgtggacgcgcattgacctgaaccactgcaagtccatcacgcccctg
ctgctgagcggcgtcatccgtcggcagcccgtcgccctggacctcagctggaccaatatc
tccaagaagcagctgagctggctcatcaaccggctgcccgggctgcgagatttggtgctg
tcaggttgctcgtgggtggccgtctccgcactctgtagcgccagttgtcctctgctccgc
accctggatgtccagtgggtggaaggactgaaggacgcccagatgcgggatctgctgtcc
cctcctactgataaccggccaggtcagatggacaatcggagcaagctccggaacatcgtg
gagctgcggctggcgggcctggacatcaccgacgcctccctgcggctcatcatccgccac
atgcccctgctctccaagctgcagctcagctactgtaaccacgtgaccgaccagtccgtt
aacctgctcactgccgtgggcaccaccacccgagactccttaactgaaatcaacctgtca
gactgcaataaggttactgatcagtgcctgtccttcttcaaacgctgtggaaatatctgt
catattgacttgaggtactgcaagcaagttaccaaggaaggctgtgagcagttcatagcc
gaaatgtctgtgagtgttcagtttggacaagtggaagaaaaactgctacaaaaactgagt
tag
DBGET
integrated database retrieval system
