Sorex fumeus (smoky shrew): 130018703
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Entry
130018703 CDS
T10594
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
130018703 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130018703 (LIG4)
Enzymes [BR:
sfum01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
130018703 (LIG4)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
130018703 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
130018703
NCBI-ProteinID:
XP_055965459
LinkDB
All DBs
Position
Unknown
AA seq
913 aa
AA seq
DB search
MAATPSSPTVASRVPFADLCLTLERIQKAKGRPEKVKHYRDFLDSWRKFHDALHKNQKDV
TDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKEGKDAQKLLNYRTPTGTRG
DAGDFAMIAYFVLKPRCLQKGSLTIQEVNSILDSIASNNSSKRKDLMKKSLLQFIAQSSA
LEQKWLIRMIVKDLKLGISHQTILSVFHSDAVELHSVTTDLEKVCRQLHDPSVGLSDISI
SLFSPFKPMLAAIADIERIEKDMKHQSFYIETKLDGERMQLHKNGDVYEYFSRNGYNYTS
QFGASPEEGSLTPFIHGAFHTDIRVCILDGEMMAYNPHTQTFMQKGNKFDIKRMVDETDL
QTCFCVFDVLMVNSKKLGHETLRKRYEILGNVLTPVPGRIEIVQKTQAHTKKEVIDALNE
AIDKREEGIMVKNPFSVYKPDKRGEGWLKIKPEYVTGLMDELDVLLVGGYWGKGSRGGMM
SHFLCAVAEKPPPGEKPSVFHSLCRVGSGYTMKELYDLGMKLSKHWKTFHKRAPPSSILC
GTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKTGCTLRFPRIERIREDKEWHECMTLEEME
QLRGRAAGKLASKHLYPGGDGNDEPQEKKRKAAPKVKKAIGIMEAFKAPNLSSVNKISNV
FEYVEFCVMSGLAGHPKPALENRIAEFGGCIVQNPGPDTYCVIAGTENIRVKNIISEGKH
DVVKPEWLLECFETQSCVPWQPRHMIHMCPSTREHFARQYDTYGDSYFIDTDVEQLKEVF
ARVKNSGGQTQEEMAPVIADLEYRYSWDHSPLSMFRRHTVYVDLYSVISDSSTRLEGTRL
AITALELRFHGAQVVSCLAEGVSHVVIGEDHSRVANLKAFRRTLQRKFKILREDWVTDSI
NKCELQEENQYLV
NT seq
2742 nt
NT seq
+upstream
nt +downstream
nt
atggccgccacgccatcttcacccacagttgcctctcgagttccctttgcagatttatgt
ttaactctggagcgaatacagaaagccaaaggacgtccagaaaaagtcaagcactacagg
gactttttggattcttggaggaaatttcatgatgcccttcataagaatcagaaagatgtc
acagactctttttatccagctatgaggctgattcttccccagctagaaagagagagaatg
gcctatggtatcaaagagacgatgctcgctaagctctacattgaactacttaatttaccc
aaagaaggaaaagatgctcagaaactattaaattatcgaacacctacagggactcgtggg
gatgcaggagactttgccatgattgcgtactttgtgctgaaaccaagatgcctgcaaaaa
ggaagcttgaccatccaggaagtcaacagcattctggactccatcgccagcaataattcc
tccaagagaaaagacctgatgaagaagagtcttcttcagtttattgctcagagttcagct
cttgagcagaagtggctcatccgaatgattgtcaaggacttaaagcttggtatcagccat
caaactattttatctgtttttcatagtgatgcggtggagttgcacagtgtcaccacagat
ctggagaaagtctgtaggcaactgcatgacccctctgttgggctcagtgatatttctatc
agtttattctctccctttaaaccaatgttagctgccatagcagatatcgaacggattgag
aaggacatgaagcaccagagtttctacattgaaacaaagctggatggtgagcgtatgcaa
ctgcacaaaaacggggacgtctatgagtatttctcccgaaacgggtacaactacacttcg
cagtttggtgcttcccctgaggagggttctcttacaccattcatccatggtgctttccac
acagacatacgagtctgtatcctggatggtgagatgatggcctacaatcctcacacgcag
acttttatgcaaaaggggaacaaatttgatattaaacggatggtggatgagactgacctg
cagacctgcttctgtgttttcgacgtcctgatggtcaatagtaagaaacttggacacgaa
accctgaggaagaggtatgagattctggggaacgttctcacaccggtaccaggccggata
gaaatcgtgcagaaaacacaagctcataccaagaaagaagtcattgatgctttaaatgaa
gccatagataaacgagaagagggaatcatggtcaagaaccccttctccgtttacaagcca
gacaagagaggggaaggatggctgaagattaaacccgagtatgtaaccgggctgatggat
gagctggatgtcttacttgttgggggctactgggggaaaggctcacggggtggaatgatg
tcccactttctgtgtgcggtggcagagaagccgcctccaggggagaagccatcagtgttt
catagcctctgccgtgtgggctcaggttacacgatgaaagaactgtatgacctgggtatg
aagctgtcgaagcactggaagacatttcacaaaagggctcctcccagcagcattttatgt
ggaacagagaagccggaagtgtacattgagccctgcaactctgtcattgtccagatcaag
gcagcagagatcgtccccagtgacatgtataaaacgggttgcacgctgcgcttcccgcgg
atcgaaaggatcagggaggacaaagagtggcatgagtgcatgactctggaggagatggag
cagctccggggcagggcggccgggaagctggcttccaaacacctctaccccggtggtgat
ggcaatgatgaaccacaagagaaaaagcggaaagctgcccccaaggtgaagaaagccatc
ggcatcatggaagccttcaaagcccccaacctctccagtgtgaacaaaatctcgaatgta
tttgaatatgtagaattttgtgtgatgagtggcctggctggccacccgaagcctgccctg
gagaacagaattgcagaattcggaggctgcatagtccagaatccaggcccggatacgtac
tgtgtcattgcagggaccgagaacatccgagtgaaaaacatcatctctgaaggcaagcat
gatgttgtcaagcccgagtggcttctggagtgcttcgaaacccagagctgcgtgccctgg
caacctcggcacatgatccacatgtgcccatccacaagggagcattttgcccgccagtat
gacacatacggtgacagttattttattgacacagacgtggagcagctgaaggaagtgttt
gcaagagttaaaaattctggcggacaaactcaggaagaaatggctcccgtgattgccgat
ttagagtatcgatattcctgggaccactctcctcttagtatgtttcggcgtcacactgtg
tatgtggacctgtattctgtcattagcgattcgagcaccagactggagggcacaaggcta
gccatcactgccttggagcttcggtttcatggagcccaagtcgtttcttgtctagcagaa
ggcgtatcacacgtagtcattggggaggaccatagccgagtggccaatcttaaagctttt
cgaagaactcttcagagaaagttcaaaatcctacgagaagattgggtaactgattcgata
aacaaatgtgagttgcaggaggaaaatcagtatctggtttga
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