KEGG   Sorex fumeus (smoky shrew): 130019128
Entry
130019128         CDS       T10594                                 
Symbol
RB1
Name
(RefSeq) retinoblastoma-associated protein isoform X1
  KO
K06618  retinoblastoma-associated protein
Organism
sfum  Sorex fumeus (smoky shrew)
Pathway
sfum01522  Endocrine resistance
sfum04110  Cell cycle
sfum04218  Cellular senescence
sfum04934  Cushing syndrome
sfum05160  Hepatitis C
sfum05161  Hepatitis B
sfum05163  Human cytomegalovirus infection
sfum05165  Human papillomavirus infection
sfum05166  Human T-cell leukemia virus 1 infection
sfum05167  Kaposi sarcoma-associated herpesvirus infection
sfum05169  Epstein-Barr virus infection
sfum05200  Pathways in cancer
sfum05203  Viral carcinogenesis
sfum05207  Chemical carcinogenesis - receptor activation
sfum05212  Pancreatic cancer
sfum05214  Glioma
sfum05215  Prostate cancer
sfum05218  Melanoma
sfum05219  Bladder cancer
sfum05220  Chronic myeloid leukemia
sfum05222  Small cell lung cancer
sfum05223  Non-small cell lung cancer
sfum05224  Breast cancer
sfum05225  Hepatocellular carcinoma
sfum05226  Gastric cancer
Brite
KEGG Orthology (KO) [BR:sfum00001]
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    130019128 (RB1)
   04218 Cellular senescence
    130019128 (RB1)
 09160 Human Diseases
  09161 Cancer: overview
   05200 Pathways in cancer
    130019128 (RB1)
   05207 Chemical carcinogenesis - receptor activation
    130019128 (RB1)
   05203 Viral carcinogenesis
    130019128 (RB1)
  09162 Cancer: specific types
   05212 Pancreatic cancer
    130019128 (RB1)
   05225 Hepatocellular carcinoma
    130019128 (RB1)
   05226 Gastric cancer
    130019128 (RB1)
   05214 Glioma
    130019128 (RB1)
   05220 Chronic myeloid leukemia
    130019128 (RB1)
   05218 Melanoma
    130019128 (RB1)
   05219 Bladder cancer
    130019128 (RB1)
   05215 Prostate cancer
    130019128 (RB1)
   05224 Breast cancer
    130019128 (RB1)
   05222 Small cell lung cancer
    130019128 (RB1)
   05223 Non-small cell lung cancer
    130019128 (RB1)
  09172 Infectious disease: viral
   05166 Human T-cell leukemia virus 1 infection
    130019128 (RB1)
   05161 Hepatitis B
    130019128 (RB1)
   05160 Hepatitis C
    130019128 (RB1)
   05163 Human cytomegalovirus infection
    130019128 (RB1)
   05167 Kaposi sarcoma-associated herpesvirus infection
    130019128 (RB1)
   05169 Epstein-Barr virus infection
    130019128 (RB1)
   05165 Human papillomavirus infection
    130019128 (RB1)
  09167 Endocrine and metabolic disease
   04934 Cushing syndrome
    130019128 (RB1)
  09176 Drug resistance: antineoplastic
   01522 Endocrine resistance
    130019128 (RB1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:sfum01009]
    130019128 (RB1)
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sfum03000]
    130019128 (RB1)
Protein phosphatases and associated proteins [BR:sfum01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     130019128 (RB1)
Transcription factors [BR:sfum03000]
 Eukaryotic type
  Other transcription factors
   Pocket domain Rb
    130019128 (RB1)
SSDB
Motif
Pfam: Rb_C RB_A RB_B DUF3452 STK_08120-like
Other DBs
NCBI-GeneID: 130019128
NCBI-ProteinID: XP_055965687
LinkDB
Position
Unknown
AA seq 931 aa
MPPKNHRRAAAVAAAAAAAAAEPPAPPPPPPPEEDPEPDSGPEDLPLARLEFEEAEDPDF
TALCQILKIPDHVRERAWLTWDKVSSMDGVLEDYIQKKKELWGICIFIAAVDLDEIPFTF
TELQKNIETSVYKFFDLLKEIDTSTKVDNAMSRLLNKYNVLCALYSKLERTCELIYLTQS
NSSVTTEINSVLVLKVSWITFLLAKGEVLQMEDDLVISFQLMLCVLDYFIKLSPPALLKE
PYKTAVIPINGSPRTPRRGQNRSARIAKQLENDTRIIEVLCKEHECNIDEVKNVYFKNFI
PFMNSLGIVASNGLPEVESLSKQYEEIYLKNKDLDARLFLDHDKTLQADPTDSLELQRTP
RKNNPDEDVNVIIPQTPVRTVMNTIQQLMMILNSASDQPSENLISYFNNCTVNPKENILK
RVKDIGYIFKEKFAKAVGQGCMEIGLQRYKLGVRLYYRVMESMLKSEEERLSIQNFSKLL
NDSIFHMSLLACALEVVMATYSRSMSQNLDTGTDLSFPWILNVLNLKAFDFYKVIESFIK
AEANLTREMIKHLERCEHRIMESLAWLSDSPLFDLIKQAKDREGPADHLESACNLSLPLQ
NNHTAADMYLSPIKSPKKKGSTTRLNSTANAEAQATSALQTQKPLKPTSLSLFYKKVYRL
AYLRLNTLCARLLSNHPELEHIIWTLFQHTLQNEYELMRDRHLDQIMMCSMYGICKVKNI
DLKFKIIVTAYKDLPHAVQETFKRVLIREEEYDSIIVFYNSVFMQRLKTNILQYASTRPP
ALSPIPHIPRSPYNFSSSPLRIPGGNIYISPLKNPYKISEGLPTPTKMTPRSRILVSIGE
SFGTSEKFQKINQMVCNSDRVLKRSAEGSNPPKPLKKLRFDIDGSDEADGSKHLPGESKF
QQKLAEMTSTRTRMQKQKMNDSMDTSNKEEK
NT seq 2796 nt   +upstreamnt  +downstreamnt
atgccgcctaaaaaccaccgaagagccgccgccgttgccgccgccgccgccgccgccgcc
gccgaacccccagccccgccgccgccgcctcctcctgaggaggacccggagccggacagc
ggccccgaggacctgcctctggccaggcttgagtttgaagaagctgaagatccggatttt
actgcattatgtcagatattaaagataccagatcatgtgagagaaagagcttggttaact
tgggataaagtttcatctatggatggagtattggaagattatattcaaaagaaaaaagaa
ctgtggggaatctgtatctttattgcggcagttgatttagatgagataccattcactttt
acggagctacagaaaaacatagaaaccagtgtctataagttctttgatttactaaaagaa
attgataccagtactaaagttgacaatgctatgtcaagacttttgaacaaatacaatgta
ttgtgtgcactctacagcaaattagaaaggacatgtgaacttatctacttaacacagtcc
aacagttcagtaactactgaaataaactctgtgttggtgctaaaagtttcttggatcaca
tttttactagctaaaggggaagtattacaaatggaagatgatctggtgatctcctttcaa
ttgatgttgtgtgtccttgactattttataaaactctcaccacctgcattgctcaaggaa
ccatataaaacagctgtaatacctattaatggttctcctcgaacaccaaggcgaggtcag
aacaggagtgcacggatagccaaacaactagaaaatgatacaagaattattgaagttctc
tgtaaagaacacgaatgtaatatagatgaggtgaaaaatgtttatttcaaaaattttata
ccgtttatgaattctcttggaattgtagcttccaatggacttccagaggtggaaagtctc
tctaaacaatatgaagaaatttaccttaaaaacaaagatctggatgcaagattatttctg
gatcatgataaaacacttcaagctgatcctacagacagtttagaattgcagagaacacca
cgcaaaaataatcctgatgaagatgtgaatgtgattattccacaaactccagttcgaact
gttatgaatactattcaacaactaatgatgatcttaaattcagcaagtgatcaaccatca
gaaaatctaatttcctattttaataactgcacagttaatccaaaggaaaatatcctgaaa
cgagtgaaggatattggatacatctttaaagaaaaattcgctaaggctgtgggacaggga
tgtatggagattggattgcagcgatacaaacttggagtgcgattgtattatcgagtaatg
gaatccatgcttaaatcagaagaagagcgattatccattcaaaatttcagtaagctcctg
aatgacagcatctttcatatgtctttgttggcgtgtgctcttgaggtcgtaatggctact
tatagcagaagtatgtctcagaatcttgatactggaacggatctgtcctttccatggatt
ctgaatgtacttaacttgaaagcttttgatttttacaaagtgattgaaagttttatcaaa
gcagaagccaacttgaccagagaaatgataaaacatttagagcgatgtgaacatcgaatc
atggaatcccttgcatggctctcagattcacctttatttgatcttattaaacaagcaaaa
gaccgggaaggaccagctgaccaccttgaatctgcttgtaatctcagccttcctttacag
aataatcacactgcagcagatatgtatctttctccaataaaatctccaaagaaaaaaggg
tcaactacacgtttaaattctactgcaaatgcagaggctcaagcaacttcagcactccag
acacagaaacctttgaaacctacctccctttcactcttttataaaaaagtttatcgatta
gcatatcttcgactcaataccctgtgtgcacgccttctctccaaccacccagaactagaa
catatcatctggaccctttttcagcacactctgcaaaatgaatatgaactcatgagagac
aggcatttggaccagattatgatgtgttccatgtatggtatatgcaaagtgaagaatata
gatcttaagttcaaaattattgtaacagcatataaggatcttcctcatgctgttcaggag
acattcaaacgtgttttgatcagagaagaggaatatgactccattatagttttctataac
tcagtcttcatgcagagactaaaaacaaatattttacagtatgcttctacacggcctcct
gccttgtctccgatacctcacattcctcgcagtccttacaatttttctagttcacctttg
cggattcctggggggaatatctatatatcacccctaaaaaacccatataaaatttcagaa
ggtctgccaacaccaacaaaaatgactccaagatcaagaatcttagtatcaattggtgaa
tcatttgggacttctgagaagttccagaaaataaatcagatggtgtgcaacagtgaccga
gtgctcaaacgaagtgctgaaggaagcaacccgcctaagccactgaaaaagctgcgcttt
gatatcgatggatcagatgaagcagatggaagtaaacatctcccaggggaatccaaattt
caacagaaactggcagaaatgacctctacgcgaacacgaatgcaaaagcagaaaatgaat
gatagcatggatacttccaacaaggaagaaaagtga

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