Sorex fumeus (smoky shrew): 130025446
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Entry
130025446 CDS
T10594
Symbol
TDG
Name
(RefSeq) G/T mismatch-specific thymine DNA glycosylase
KO
K20813
thymine-DNA glycosylase [EC:
3.2.2.29
]
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
130025446 (TDG)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
sfum03400
]
130025446 (TDG)
Enzymes [BR:
sfum01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.29 thymine-DNA glycosylase
130025446 (TDG)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
130025446 (TDG)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UDG
Motif
Other DBs
NCBI-GeneID:
130025446
NCBI-ProteinID:
XP_055972365
LinkDB
All DBs
Position
Unknown
AA seq
424 aa
AA seq
DB search
MEAENAGSCSLQVPAFYSFPFAPTMAEAPAPMVPREEPMHEEPATAEAPLPAPAEEPMPE
APRGRKRKPRAASQAKKPAEPKKRAEPKKPAEPKKPAEAKKSGKSKKSKDKQEKITDAFK
VKRKVDRFNGVSEAELLTKTLPDILTFNLDIVIIGINPGLMAAYKGHHYPGPGNHFWKCL
FMSGLSEVQLNHMDDHTLPGKYGIGFTNMVERTTPGSKDLSSKEFREGGRILVQKLQKYQ
PRIAVFNGKCIYEIFSKEVFGVKVKNLEFGLQPHKIPDTETLCYVMPSSSARCAQFPRAQ
DKVHYYIKLKDLRDQLKGIERNTDVQEVQYTFDLQLAQEDAKKMAVKEEKYDPGYEAAYG
GAYSENPYSSEPCSVLANGLTAPSGESALSDVPNGQWMAQPFTDQIPPFSTQCGTQGQED
GTQA
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggaagcggagaacgcgggcagctgttcccttcaggttccggctttctattcgtttcct
tttgcacccacgatggccgaggcgccggcccccatggtgccgagggaagagccgatgcac
gaggagccagcgacggccgaagccccgctgcccgctccggcggaggagcccatgccagag
gccccaagaggaagaaaaagaaaacccagagcagcgtcacaagccaaaaagcctgcggaa
cccaaaaagcgagcggaacccaaaaagccagcggaacctaaaaaacctgctgaggcaaaa
aaatctggcaaatccaaaaaatcaaaagacaagcaagaaaaaatcacagatgcgtttaaa
gtcaaaagaaaagtggaccgttttaatggcgtttcagaagccgagcttttgaccaagact
ctccccgacattttgacgttcaatctggacatcgtcattattggcataaaccctggactc
atggctgcttacaaagggcatcattatcctggacctggaaatcatttttggaagtgtctg
tttatgtcagggctgagtgaagttcagctgaatcacatggatgaccacacattaccaggg
aaatatggtattgggtttaccaatatggtggaaaggaccacgccaggcagcaaggatctt
tccagtaaagaattccgtgaaggaggacgtatacttgtgcagaagttacagaagtatcag
ccgcggatagcagtgtttaatggaaaatgtatttatgaaatatttagtaaagaagttttt
ggagtcaaggttaagaacttagaatttggacttcagccccataaaatcccagacacagaa
actctctgctatgtcatgccgtcatctagtgctagatgtgcgcagtttcctcgcgcccag
gacaaagtgcattactacattaagttgaaggacttaagagatcagctgaaaggcattgaa
cggaacacagacgttcaggaggtgcaatatacattcgacttacagctggcccaagaggat
gcaaagaagatggctgtgaaggaagagaagtacgatccgggttacgaggctgcttatgga
ggcgcttacagtgaaaacccgtacagtagtgagccttgcagcgtccttgccaatgggcta
actgctcccagtggagagtcggcgctgagtgacgttccgaacgggcagtggatggcccag
ccgtttacagaccagattcctcccttcagcacacagtgcggcacacaaggacaagaggac
ggaacccaggcctga
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