Sorex fumeus (smoky shrew): 130029735
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Entry
130029735 CDS
T10594
Symbol
SLIT1
Name
(RefSeq) slit homolog 1 protein
KO
K06838
slit 1
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum04360
Axon guidance
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09150 Organismal Systems
09158 Development and regeneration
04360 Axon guidance
130029735 (SLIT1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sfum00536
]
130029735 (SLIT1)
Glycosaminoglycan binding proteins [BR:
sfum00536
]
Heparan sulfate / Heparin
Axon guidance molecules
130029735 (SLIT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRRNT
LRRCT
LRR_1
LRR_9
EGF_TEN
LRR_14
EGF_DL_JAG
FNIP
EGF_3
EGF_Teneurin
Motif
Other DBs
NCBI-GeneID:
130029735
NCBI-ProteinID:
XP_055976742
LinkDB
All DBs
Position
Unknown
AA seq
1535 aa
AA seq
DB search
MALTTRRGPLAGPLGPPQLWLLLWTAAWRLGATACPALCTCTGTTVDCHGAGLRAIPKNI
PRNTERLELNGNNITRIHKNDFAGLKQLRVLQLMENQIGVVERGAFDDMKELERLRLNRN
QLQVLPELLFQHNQALSRLDLSENTIQAIPRKAFRGATDLKNLQLDKNHISCIEEGAFRA
LRGLEVLTLNNNNITSIPVSSFNHMPKLRTFRLHSNHLFCDCHLAWLSQWLRQRPSIGLF
TQCSGPAALRGLNVAEVQKSEFSCSGQGEAGRPPSCTLSSGSCPAMCTCSSGIVDCRGKG
LTAIPANLPETMTEIRLELNGIKSIPPGAFSPYRKLRRIDLSNNQIAEMAPDAFQGLRSL
NSLVLYGNKITDLPRGVFGGLYTLQLLLLNANKINCIRPDAFQDLQNLSLLSLYDNKIQS
LAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADFLRTNPVETSGARCASPRRLANKRIGQ
IKSKKFRCSAKEQYFIPGTEDYQLNSECSSDVVCPHKCRCENSVAECSGLRLTKIPERVP
QATAELRLNNNEISILEATGMFKKLTHLKKINLSNNKLSEIEDGAFEGAASVSELHLTSN
QLESIRSGMFRGLDGLRTLMLRTNRISCIHNDSFTGLRNVRLLSLYDNQIATIAPGAFDT
LQALSTLNLLANPFNCDCQLAWLGDWLRKRKIVTGNPRCQNPDFLRQIPLQDVAFPDFRC
EEGQEEVGCLPRPQCPQECACLDTVVRCSNKHLQALPKGIPKNVTELYLDGNQFTLVPGQ
LSTFKYLQLVDLSNNKISSLSNSSFTNMSQLTTLILSYNALQCIPALAFQGLRSLRLLSL
HGNDISTLQEGIFADVTSLSHLAIGANPLYCDCHLRWLSGWVKTGYKEPGIARCAGPPDM
EGKLLLTTPAKKFDCQGPPTLAVQAKCDPCLSSPCQNQGTCSNDPSEGYRCACPSGYKGR
DCAVSLDSCASGPCENGATCHSQDGEGVAFTCSCPTGFEGPTCGVNTDDCVEHTCANGGT
CVDGVGNYTCQCPPQYAGRACEQLVDFCSPALNPCQHEARCVGTPDGPRCECAQGYAGDN
CSENQDDCRGHRCQNGARCLDQVNGYSCLCAEGYSGQFCETSPGPPAPKSPCEGTECQNG
ARCVVQGSRPVCHCLPGFGGPECEKLLSVNFVDRDTYLQFTDLQNWPRANITLQVSTAED
NGILLYNGDSDHMAVELYQGHVRVSYDPGSYPSSAIYSTETINDGQFHTVELVTFDQMVN
LSIDGGSPLTMDNSGKHYTLNSETPLYVGGMPVDVNSAAFRLWQILNGSSFHGCIRNLYI
NNELQDFTKTRMKPGVVPGCEPCRKLYCLHGICQPNATPGPVCHCEAGWGGPHCDQPAAG
PCHGHKCVHGKCVPLDALSYSCQCQDGYSGALCNQAGARADPCGGLQCLHGHCQASATQG
PHCVCDPGFAGERCEQESACRGDPVRDFHQVQRGYAVCRTTRPLSWVQCQGGCPGHGCCQ
GLRQKRRKLTFECSDGTSFAAEVEKPTRCGCAPCA
NT seq
4608 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgaccacccggcggggacccttggccgggcccctcggcccgccccagctctgg
ctgctgctgtggaccgccgcgtggcgcctgggggccacggcgtgccccgccctctgcacc
tgcaccggcaccacggtggactgtcacggcgcggggctccgcgccatccccaagaacatc
ccccggaacaccgagcgtctggaactcaatggcaacaacatcacccggatccacaagaat
gacttcgccgggcttaagcagctgcgtgtgctgcagctgatggagaaccagatcggcgtg
gtggaaaggggggcttttgatgacatgaaggaactggagcggctacggctgaaccggaac
cagctgcaggtgctaccggagctgctgttccagcataaccaggctctgtcgagattggac
ttgagtgagaacaccatccaggccatccccaggaaagcttttcgtggagctacagacctc
aagaacttacaactggacaagaaccacatcagctgcatcgaggaaggtgccttcagggct
ctgcgcgggctggaggtgctgaccctgaacaacaacaacatcacgtccatccctgtgtcc
agcttcaaccacatgcccaagctgcgcaccttccgcctgcactccaaccacctgttctgt
gactgccacctggcctggctctcccagtggctgcgacagcgccccagcatcgggctcttc
acgcagtgctcggggcctgccgccctgcgtggcctcaatgtggccgaggtccagaagagt
gagtttagctgctcaggccagggcgaggcgggccgcccgccgtcctgcaccctgtcgtcc
ggctcctgcccggccatgtgcacctgcagcagcggcatcgtggactgccgagggaagggc
ctcaccgccatccccgccaacctgcccgagaccatgacagagatccgcctggagctcaac
gggatcaagtccatcccgcctggagccttctctccctacaggaagctgcggcggatagac
ctgagcaacaaccagattgcagagatggcgcctgacgccttccagggcctccgctccctg
aactcgctggtcctatacggaaacaagatcacagacctgccccggggtgtgtttggaggc
ctgtacaccttacagctcctgcttttaaatgccaacaagatcaactgcatccggcctgat
gccttccaggacctgcagaacctctctctgctctccctgtacgacaacaagatccagagt
ctggccaagggcacctttacctccctgagggccatccagaccctgcacctggcccagaac
cccttcatctgtgactgcaacctgaagtggctggccgacttcctgcgcaccaaccccgtg
gagacgagcggggcacgttgtgccagcccacgacgcctggccaacaagcgcatcgggcag
atcaagagcaagaagttccgttgctcagccaaagaacagtacttcatcccaggcaccgag
gattaccagctcaacagcgagtgcagcagcgacgtggtctgtccccacaagtgccgctgc
gagaacagcgtggctgagtgctccggcctgaggctgaccaagatcccagagcgcgtcccc
caggccacggccgagctacgattaaacaacaatgagatttccatcctggaggccactggg
atgtttaaaaaactaacacatttaaagaaaatcaacctgagcaacaacaagctgtcagaa
atcgaggacggagccttcgagggcgcggcatccgtgagcgagctgcacctgacctccaac
cagctggagtccatccggagcggcatgttccggggcctggacggtctgaggacgctgatg
ctgaggaccaaccgcatcagctgcatccacaacgacagcttcacgggcctgcgcaacgtg
cggctcctctcgctctacgacaaccagattgccaccatcgccccgggcgccttcgacacc
ctgcaggccctgtccacgctaaacctcctggccaaccctttcaactgcgactgccagctg
gcctggctgggggactggctgcgcaagaggaagatcgtgaccgggaacccgcggtgccag
aaccccgacttcctgcggcagatccccctgcaggacgtggccttccccgactttaggtgt
gaggaaggccaggaggaagtgggctgccttccccggcctcagtgcccccaggaatgtgcc
tgtctggacactgtggtccgatgcagcaacaagcacctccaggccctgcccaagggcatc
cccaagaacgtcacagagctctacctggacgggaaccagttcacgttggttccgggacag
ctgtccaccttcaagtacctgcagcttgtggatctgagtaacaacaagatcagttccttg
agcaactcctccttcaccaacatgagccagctgaccaccttgatcctcagctacaacgcg
ctccagtgcatcccggccctggccttccaggggctgcgctccctgcgcctgctgtccctg
catggcaatgacatctctaccctccaagagggcatcttcgcagacgtgacctccctgtct
cacctggctattggtgccaatcccctgtattgtgactgccacctgcgctggctctctggc
tgggtgaagacgggttacaaggagccaggcattgctcgttgcgctggacccccggacatg
gagggcaagctgctcctcaccacacctgccaaaaagtttgactgccaaggtccccccacc
ctggctgtccaggccaagtgtgacccgtgcttgtccagtccatgccagaaccagggcacc
tgttctaatgacccttcggaggggtacaggtgtgcctgtcccagcggctacaagggccgg
gactgtgcggtgtctctggatagctgtgccagtggcccctgtgagaacggggcgacctgc
cactctcaggatggcgagggtgtggccttcacgtgctcctgccccactggctttgaagga
cccacatgtggggtgaacacagatgactgtgtggagcacacatgtgccaacgggggcacc
tgtgtggatggtgtgggcaactacacctgccagtgccccccgcagtatgcgggacgggcc
tgcgagcagctggtggacttctgctccccagctctgaacccatgtcagcacgaggcccgg
tgtgtgggcaccccagatgggccccggtgtgagtgtgcccaaggctatgcaggggacaac
tgcagtgagaaccaggatgactgtcggggtcaccgctgccagaacggggcccggtgtttg
gaccaagtcaacggctactcatgcctctgtgccgagggctacagtgggcagttctgtgag
acctctccaggcccgcctgcccccaagagcccgtgcgaggggaccgagtgccagaacggg
gcccgctgcgtggtgcagggcagccggcccgtgtgccattgtctcccaggatttgggggg
cctgagtgtgaaaagcttctcagcgtcaacttcgtggatcgggacacatacctgcagttc
accgacctgcagaactggcctcgggccaacatcacgctgcaggtgtcgacggctgaggat
aacggaatcctgctgtacaacggggacagcgaccacatggcggtggagctataccagggc
catgtgcgcgtcagctacgatccgggcagctaccccagctctgccatctatagtactgag
accatcaatgacgggcagttccacaccgtcgagctggtcaccttcgaccagatggtgaac
ctgtccatcgatggcggcagccccctgaccatggacaactctggcaaacactatacactc
aacagcgagacgcccctctatgtgggagggatgcccgtggacgtaaactcggccgccttc
cgcctgtggcaaatcctcaatgggagcagtttccatggctgcatccgcaacctgtacatc
aacaacgagctgcaggacttcaccaagacgcgcatgaagccgggcgtggtgccgggctgc
gagccctgccggaagctgtactgcctgcatggcatctgccagcccaatgccacccctggg
cccgtgtgccactgcgaggctggctgggggggcccgcactgtgaccagcccgccgctggg
ccctgccacggccacaagtgtgtccacgggaagtgtgtgccccttgacgccctctcctac
agctgccagtgccaggatgggtactcgggtgccctgtgcaaccaggccggggcccgcgcc
gacccgtgtggggggctgcagtgcctgcacggccactgccaggcctcagccacccagggg
ccacactgcgtgtgtgatcctggctttgcgggcgagcggtgcgagcaagagtccgcgtgc
cggggggaccccgtccgggactttcaccaggtgcagaggggctatgccgtctgccggacc
acgcggccgctgtcgtgggtgcagtgccagggagggtgcccgggccacggctgctgccag
gggctgcggcagaagcggaggaagttgacctttgagtgcagcgacgggacctcctttgca
gccgaggtggagaagcccaccaggtgcggctgcgccccctgcgcctag
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