Sorex fumeus (smoky shrew): 130035194
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Entry
130035194 CDS
T10594
Symbol
EFTUD2
Name
(RefSeq) 116 kDa U5 small nuclear ribonucleoprotein component
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
sfum Sorex fumeus (smoky shrew)
Pathway
sfum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
sfum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130035194 (EFTUD2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
sfum03041
]
130035194 (EFTUD2)
Spliceosome [BR:
sfum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
130035194 (EFTUD2)
Complex C
U5 SnRNP specific factors
130035194 (EFTUD2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
EFL1
EF-G_D2
Motif
Other DBs
NCBI-GeneID:
130035194
NCBI-ProteinID:
XP_055982732
LinkDB
All DBs
Position
Unknown
AA seq
972 aa
AA seq
DB search
MDTDLYDEFGNYIGPELDSDEDDDELGRETKDLDEMDDDEEDEDVGDHDDDHPGMEVVLH
EDKKYYPTAEEVYGPEVETIVQEEDTQPLTEPIIKPVKTKKFTLMEQTLPVTVYEMDFLA
DLMDNSELIRNVTLCGHLHHGKTCFVDCLIEQTHPEIRKRYDQDLCYTDILFTEQERGVG
IKSTPVTVVLPDTKGKSYLFNIMDTPGHVNFSDEVTAGLRISDGVVLFIDAAEGVMLNTE
RLIKHAVQERLAVTVCINKIDRLILELKLPPTDAYYKLRHIVDEVNGLISIYSTDENLIL
SPLLGNVCFSSSQYSICFTLGSFAKIYADTFGDINYQEFAKRLWGDIYFNPKTRKFTKKA
PTSSSQRSFVEFILEPLYKILAQVVGDVDTSLPRTLDELGIHLTKEELKLNIRPLLRLVC
KKFFGEFTGFVDMCVQHIPSPKVGAKPKIEHTYTGGVDSDLGEAMSDCDPDGPLMCHTTK
MYSTDDGVQFHAFGRVLSGTIHAGQPVKVLGENYTLEDEEDSQICTVGRLWISVARYHIE
VNRVPAGNWVLIEGVDQPIVKTATITEPRGNEEAQIFRPLKFNTTSVIKIAVEPVNPSEL
PKMLDGLRKVNKSYPSLTTKVEESGEHVILGTGELYLDCVMHDLRKMYSEIDIKVADPVV
TFCETVVETSSLKCFAETPNKKNKITMIAEPLEKGLAEDIENEVVQITWNRKKLGEFFQT
KYDWDLLAARSIWAFGPDATGPNILVDDTLPSEVDKALLGSVKDSIVQGFQWGTREGPLC
DELIRNVKFKILDAVVAQEPLHRGGGQIIPTARRVVYSAFLMATPRLMEPYYFVEVQAPA
DCVSAVYTVLARRRGHVTQDAPIPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFSLSV
FHHWQIVPGDPLDKSIVIRPLEPQPAPHLAREFMIKTRRRKGLSEDVSISKFFDDPMLLE
LAKQDVVLNYPM
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atggacactgacctgtatgatgagtttgggaattacatcggaccagagcttgattcagat
gaagatgatgacgaactgggcagagaaaccaaagatcttgacgagatggatgacgatgag
gaggatgaggatgtcggcgatcacgacgacgaccacccaggcatggaggtggtgctgcat
gaggacaagaaatactaccccacagcggaggaggtgtacgggcccgaggtggagaccata
gttcaggaggaagacacgcagcccctgacagaacctattattaagccggtgaaaaccaag
aaattcactctgatggagcagacgttacctgtcacagtgtatgaaatggatttcttggct
gacctgatggataactcagagctcatcagaaatgtcaccctttgtgggcacctccaccac
ggcaagacatgcttcgttgattgtctgatagagcagactcacccagaaatcaggaagcgc
tacgaccaagatctctgctacactgacatcctgttcacagagcaggagaggggcgtgggc
atcaagagcaccccggtaaccgtggtcttgcccgacaccaaagggaagtcgtacctcttc
aacatcatggacacaccaggacatgtgaatttttctgatgaggtcacggccggcttgcgc
atctcagatggggtggtcctcttcatcgatgctgctgagggggtgatgctgaacacagag
cgactgatcaagcacgccgtgcaggagcggctggccgtcaccgtgtgcatcaacaagatc
gatcggctcatcctggagctgaagctgccacccacggatgcatactacaagctgcgccac
atcgtcgatgaggtcaatgggctgatcagcatatactccacggatgagaatctgatcctg
tctccgctcctgggcaatgtctgcttctcgagctcccagtacagcatctgcttcacactg
ggctcctttgccaagatctatgctgacacctttggtgatattaactaccaggagtttgct
aaaagactctggggtgacatctacttcaaccccaagacgcgaaagttcaccaagaaggcc
ccaaccagcagctcccagaggagcttcgtggagtttatcttggaacctctgtataagatc
ctggcccaggtggtgggtgacgtggacaccagcctcccaaggaccctggatgaactcggc
atccacctgactaaggaggaactgaagctaaacatccgcccccttctcagactggtgtgc
aagaaattcttcggcgagttcacaggctttgtggacatgtgtgtgcagcacatcccgtct
ccgaaggtgggcgccaagcccaagatcgaacacacctacacgggtggcgtggactccgac
cttggcgaggccatgagcgactgtgaccccgatgggcccctgatgtgccacaccacgaag
atgtacagcactgacgatggggtccagtttcatgcctttggccgggtactcagcggcacc
atccatgctgggcagccggtgaaggtgctgggggagaattacaccctggaggacgaggag
gactcgcagatttgcaccgtgggccgcctgtggatctccgtggccaggtaccacattgag
gtgaaccgagtccctgccggcaactgggttctgatagaaggcgtggatcaacccatcgtc
aagacagcgactatcactgaaccccgaggcaatgaggaggctcagattttccggcccttg
aagttcaacaccacgtctgtcatcaagatcgccgtggagccagtcaacccatctgagctc
cccaagatgctggatggcctgcgcaaggtcaacaagagttacccctccctcaccaccaag
gtggaagagtctggcgagcacgtgatcctgggcacaggcgagctctacctggactgcgtg
atgcacgacctgcgcaagatgtactcggagatagacatcaaggtggccgatcctgtggtc
acattttgtgagacagtggtggaaacgtcctccctcaagtgctttgccgagacgcctaac
aagaagaacaagatcaccatgattgcagagccccttgagaagggcctggccgaggacatt
gagaacgaggtggtgcagataacgtggaaccggaagaagctgggagagtttttccagacc
aagtacgattgggatctgctagctgcccgttccatctgggcttttgggcctgatgccacc
ggccccaacatcctggtggacgataccctgccctctgaggtcgacaaggctcttcttggc
tcggtgaaggacagcatcgttcagggtttccagtggggaaccagagaggggcccctgtgt
gatgagttgatccgaaacgtcaaatttaagatcctggatgctgtggttgcccaggagccc
ctgcaccggggcgggggccagatcatccccacggccaggagagtcgtctactcagccttc
ctcatggccacgccacgtctcatggagccgtattactttgtggaggtgcaggcccctgcg
gactgcgtgtctgctgtctacactgtcctggccaggcgtagggggcacgtaacacaggat
gcgcccatccctggctcccctctctacaccatcaaagccttcatccctgccatcgattct
ttcggcttcgaaacggatctgcggactcacacgcagggccaggccttttccctgtctgtc
ttccaccactggcagattgtccctggtgatcctctagacaagagcatcgtgatccggccc
ctggagccccagccagccccccacctggctcgggaattcatgatcaaaacccggcggcgg
aagggcctgagtgaggatgtgagcatcagcaagttcttcgacgaccctatgctgctggag
ctcgccaagcaggatgtagtgctcaattaccccatgtga
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