Sorex fumeus (smoky shrew): 130041584 Help Entry 130041584         CDS       T10594                                  Symbol THBS1 Name (RefSeq) thrombospondin-1   KO K16857   thrombospondin 1 Organism sfum  Sorex fumeus (smoky shrew) Pathway sfum04015   Rap1 signaling pathway sfum04115   p53 signaling pathway sfum04145   Phagosome sfum04148   Efferocytosis sfum04151   PI3K-Akt signaling pathway sfum04350   TGF-beta signaling pathway sfum04510   Focal adhesion sfum04512   ECM-receptor interaction sfum04820   Cytoskeleton in muscle cells sfum05144   Malaria sfum05165   Human papillomavirus infection sfum05205   Proteoglycans in cancer sfum05206   MicroRNAs in cancer sfum05219   Bladder cancer Brite KEGG Orthology (KO) [BR:sfum00001]  09130 Environmental Information Processing   09132 Signal transduction    04015 Rap1 signaling pathway     130041584 (THBS1)    04350 TGF-beta signaling pathway     130041584 (THBS1)    04151 PI3K-Akt signaling pathway     130041584 (THBS1)   09133 Signaling molecules and interaction    04512 ECM-receptor interaction     130041584 (THBS1)  09140 Cellular Processes   09141 Transport and catabolism    04145 Phagosome     130041584 (THBS1)    04148 Efferocytosis     130041584 (THBS1)   09143 Cell growth and death    04115 p53 signaling pathway     130041584 (THBS1)   09144 Cellular community - eukaryotes    04510 Focal adhesion     130041584 (THBS1)   09142 Cell motility    04820 Cytoskeleton in muscle cells     130041584 (THBS1)  09160 Human Diseases   09161 Cancer: overview    05206 MicroRNAs in cancer     130041584 (THBS1)    05205 Proteoglycans in cancer     130041584 (THBS1)   09162 Cancer: specific types    05219 Bladder cancer     130041584 (THBS1)   09172 Infectious disease: viral    05165 Human papillomavirus infection     130041584 (THBS1)   09174 Infectious disease: parasitic    05144 Malaria     130041584 (THBS1)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:sfum04131]     130041584 (THBS1)   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:sfum00536]     130041584 (THBS1) Membrane trafficking [BR:sfum04131]  Endocytosis   Phagocytosis    Opsonins     130041584 (THBS1) Glycosaminoglycan binding proteins [BR:sfum00536]  Heparan sulfate / Heparin   Extracellular matrix molecules    130041584 (THBS1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TSP_C TSP_3 TSP_1 TSP1_spondin VWC TSP1_CFP_C VWC2L_2nd EGF_3 Laminin_G_3 Laminin_G_2 cEGF TSP1_ADAMTS TSP1_CCN EGF Laminin_G_1 Motif Other DBs NCBI-GeneID:  130041584 NCBI-ProteinID:  XP_055989821 LinkDB All DBs Position Unknown AA seq 1166 aa AA seqDB search MGLAWALGVLFLGHVCASNHIPESSTDNSVFDIFELTGAARKGSGRRLVKGPDPSSPAFR IEDANLIPPVPDDKFQDLVDAVRAEKGFLLLASLRQMKKTRGTLLALERKDRSGQLFSVV SNGKAGTLDLSLNLQGKQRVVSVEEALLATGQWKSITLFVQEDRAQLYIDCEKMESAELD VPIQRIFTRDLASIARLRIAKGDVNDNFQGVLQNVRFVFGTTPEDILRNKGCSSSTSPVL TLDNNVVNGSSPAIRTDYIGHKTKDLQAICGISCDELSSMVLELRGLRTIVTTLQDSIRK VSEENKQLRRSPHCYHNGVQYKNHEEWTVDSCTECHCQDSVTICKKVSCPIMPCSNATVP DGECCPRCWPSDSADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRCEGSSVQTRTCH LQECDKRFKQDGGWSHWSPWSSCSVTCGDGVITRIRLCNSPTPQMNGKPCEGEARETKAC KKDACPINGGWGPWSPWDICSVTCGGGVQKRSRLCNNPPPQFGGKDCIGDVTENQICNKQ DCPIDGCLSNPCFAGTKCTSYPDGSWKCGACPAGYSGNGIQCRDVDECKEVPDACFNHNG EHRCKNTDPGYNCLPCPPRFSGPQPFGRGVEHATANKQVCKPRNPCTDGTHDCNKNAKCN YLGHYSDPMFRCECKPGYAGNGIICGEDTDLDGWPNEDLVCVANATYHCKKDNCPNLPNS GQEDYDKDGIGDACDDDDDNDRVPDDRDNCPFHYNPAQYDYDRDDVGDRCDNCPYNHNPD QADTDKNGEGDACAVDIDGDGILNERDNCQYVYNVDQRDTDMDGVGDQCDNCPLEHNPDQ LDSDSDLIGDTCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDACDHDDDNDGIP DDKDNCRLVPNPDQKDSDGDGRGDACKDDFDHDSVPDIDDICPENVDISETDFRRFQMIP LDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGYDEFNAVDFSGTFFINTERDDDYAG FVFGYQSSSRFYVVMWKQITQTYWDTHPTKAQGYSGLSVKVVNSTTGPGEHLRNALWHTG NTPGQVRTLWHDPRNIGWKDFTAYRWRLSHRPKTGFIRVVMYEGKKIMADSGPIYDKTYA GGRLGLFVFSQEMVFFSDLKYECRDS NT seq 3501 nt NT seq  +upstreamnt  +downstreamnt atggggctggcctgggcactcggtgtcctattcctggggcacgtgtgtgcctccaaccac attccagagtcaagcacagacaacagcgtgtttgacatctttgaactcactggggctgcc cgcaagggttctgggcgccggctggtgaagggccccgatccttcaagccccgctttccgc atcgaagatgccaacctgattccccccgtacctgacgacaagttccaagacctggtggac gccgtgcgggctgagaagggcttcctcctcctggcctccctgcggcagatgaagaagacc cgaggcacgctgctggccctcgagcgcaaagaccgctccggccagctcttcagcgtggtg tccaatggcaaggcaggcacgctggacctgagcctgaacctgcagggcaaacagcgtgtg gtgtctgtggaggaagcactcctggccacaggccagtggaagagcatcaccctgtttgtg caggaggacagagcccagctctacatcgactgcgagaagatggagagtgctgagcttgat gtccccatccagaggatcttcaccagggacctggcgagcatcgccagactgcgcattgca aagggagacgtcaatgataacttccagggggtgctgcagaacgtgcggtttgtctttgga accacaccagaagatatcctcaggaacaaaggctgttcgagctctaccagtcctgttctt accctcgacaataatgtggtgaatgggtccagtcctgccatccgtactgactacattggc cataagaccaaggacctgcaggccatctgtggcatttcttgtgatgagctgtctagcatg gtcctggagctccggggcctccgcaccattgtcaccacgcttcaggacagcatccgcaaa gtgtctgaagagaacaaacagctgaggaggtcccctcactgctaccacaatggagtccag tacaagaaccacgaggagtggacagttgacagctgcacagagtgtcactgtcaggactct gttaccatctgcaaaaaggtctcctgccccattatgccctgttccaatgccactgttcct gatggagaatgctgcccacggtgttggcccagtgactcggcagatgacggctggtcccca tggtctgagtggacctcctgctcggtgacatgtggcaacggaatccagcagcgtggccgc tcctgcgacagcctcaacaacagatgcgagggctcctctgtccagacgcggacctgccac cttcaggagtgtgacaagagatttaaacaggatggcggctggagccactggtccccatgg tcttcctgctctgtgacctgtggtgatggtgtgatcaccaggatccggctctgcaactct cccactccccagatgaatggcaaaccatgtgaaggcgaagctcgggagaccaaagcctgc aagaaagatgcctgccccataaatggaggctggggtccctggtctccgtgggacatctgt tctgtcacctgtggaggaggagtgcagaaacgtagcaggctctgcaacaaccccccaccc caatttggaggcaaggactgcattggagatgtgaccgagaaccagatctgcaacaagcaa gactgtccaatcgatgggtgtctgtccaacccctgctttgcgggcaccaagtgtaccagc taccccgatggcagctggaaatgcggtgcgtgtcccgcaggttacagtggaaatggaatt cagtgcagagacgtggatgagtgcaaagaagtgccagatgcctgcttcaaccacaacgga gagcacaggtgtaagaacacagaccctggttacaactgcctgccctgcccaccacgcttc tctgggccccagccctttggccggggtgtggaacatgccactgctaacaaacaggtgtgc aagccccgcaacccctgcacagacggcacccatgactgcaacaagaatgccaagtgcaac tacctgggacattacagtgatcccatgttccgctgtgagtgcaagcctggctatgcaggc aatggcatcatctgcggagaggacacagacctggatggctggcccaatgaggacctggtg tgtgtggccaatgccacctaccactgcaaaaaggataactgccccaaccttcccaactca ggacaggaggactatgacaaagatggaatcggcgatgcctgtgatgatgatgatgacaat gacagggttccagacgatagggacaattgtccattccattacaaccccgcccagtatgac tatgacagagatgatgtgggagaccgctgtgacaactgcccctacaaccacaatccagac caggcagacaccgacaagaacggggaaggagacgcctgtgctgtggatattgacggggat ggtatcctcaatgagcgtgacaactgccagtatgtctacaatgtggaccagagggacacc gacatggacggtgttggagatcagtgtgacaactgtcccctggaacacaacccagatcag ctcgactctgactcagatctcattggtgacacctgtgacaacaatcaggacattgacgaa gatggccaccagaacaatctggataactgcccctatgtgcccaatgccaaccaggctgac catgacaaagatggcaagggagatgcctgtgatcatgatgacgataatgatggcattcct gatgacaaggacaactgcaggctggtgcccaatcccgaccagaaagactctgatggtgat ggtcgaggggatgcttgcaaagatgactttgaccatgacagtgtgccagacattgatgac atctgtcctgaaaatgttgatatcagtgagactgatttccgccgattccagatgattcct ctagatcccaaagggacatcccaaaatgaccctaactgggttgtacgtcatcagggtaaa gagctcgtccagactgtcaactgtgatcctggacttgctgtaggctatgatgagttcaac gccgtggactttagtggcactttcttcattaacaccgagcgggatgatgactatgccgga tttgtcttcggctaccagtccagcagccgcttctatgttgtgatgtggaagcaaatcaca cagacctattgggacacccaccccacaaaggctcagggctactcgggtctttctgtgaaa gtcgtgaactccaccacggggcctggcgagcacctgcggaatgccctgtggcacacaggc aatacccctggtcaggtgcgcaccctgtggcatgacccccgtaacattggctggaaggat ttcactgcctaccgatggcgtctgagccacaggccaaagacaggtttcatcagagtggta atgtatgaggggaagaaaatcatggctgactcaggacccatctatgacaaaacctatgct ggtggtagactcgggttgtttgtcttctctcaagaaatggttttcttctctgacctgaaa tacgaatgcagagattcctaa

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