Sorex fumeus (smoky shrew): 130045309
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Entry
130045309 CDS
T10594
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1 isoform X1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
sfum Sorex fumeus (smoky shrew)
Brite
Chromosome and associated proteins [BR:
sfum03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
130045309 (SMCHD1)
DNA repair and recombination proteins [BR:
sfum03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
130045309 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
130045309
NCBI-ProteinID:
XP_055994076
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Position
Unknown
AA seq
2000 aa
AA seq
DB search
MAAAGGGPAAEPGEGGGGGDGSRTVYLFDRREEEAELGDRPLQVGERQDFAGFRAAVCQT
LGISPEEKFVITTTSRKEITCDNFDETIKDGVTLYLLQSVNQLLLTATKERIDFLPHYDT
LVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRRIQIKLLFDETQGKPAVAVI
DNGRGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPVPVPRSLNSDISYFGVGGKQAV
FFVGQSARMISKPADSQDVHELMLSKEDFEKKEKNKEAIYSGYIRNRKPSDSVHITNDDE
RFLHHLISEEKDKESFTAVIITGVQPDHILYLKNHFHLWTRQLTHIYHYYIHGPKGNEKR
TSQEAGPFNNIEIEISLFEKGKTPKIVNLREIQDDMQTLYINTASDSFEFKAHVEGDGVV
EGIIRYHPFLYDRETYPDDPCFPSKLKDEDDDDDFLVLDKAARGKRPIFECFWNGRLIPY
TSVEDFDWCTPPKKRGLAPIECYNRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLFT
RILNGQEQRMKIDREFALWLKDCHEKYDKQIKFTLFKGIITRPDLPSKKQGPWATYSAIE
WDGKIYKAGQLVKTIKTLPLFYGSIVKFFLYGDHDGEVYATGGEVQIAMEPQALYDEIKT
IPIAKLDRTVAEKTVKKYVEDEMARLPDRLSVTWPEGDELLPNETRPAGTPIGALRIEIL
NKKGETMQKLPGTSHGGSKKLLVELKVILHSPNGNKEIISHISQHGGKWPYWFKKMENIQ
KLGNYTLKLQVVLNESNADTYAGRPLPSKAIKFSVKEGKPEKFSFGLLDSPFRVGVPFNI
PLEFQDEFGHTSQLVNDIQPILEASGLSLHYEEITKGPNCMIRGVTAKGPVNSCQGKNFN
LKVTLPGLKEDSQILKIKLLPGLPHRLKVKPDSEILVIENGTAFPFQVEVLDESDNITSQ
PKLIVHCKFSGAPNLPIYVVDCSSSGTSILSGSAIQVQNIKKDQMLKAKIEIPSCKNVAP
VEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEINWIAGDVMHNLIFQMYDEGEREIHI
TSALAEKIKVNWTPEINKEHLLQGLLPDVQVPASVKDMRYCQVSFQDDHVSLESAFTVRP
LPDEPKHLKCELKGGKTVRMGQELEGEIVVIVTDQYGNQIQAFSESSLSALTIAGVGLDS
SYLKTTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVQLVSGPPSKLLLVDWP
ELKESIPVINGRELQNPLIVQLCDQWDNPAPVPQVKISLTKDSCLKLTPSNQQHKTDEKG
RANLGVFSVCAPRGEHTLQVKAIYNKITIDGPKIKLMILPDPEKPIRINVKYDKDASFLA
GGIFTDFIITVISEDESTIKNINPARISMKLWKLSNSGSRPPPNAETFSCNKIKDDKEDG
CFYFRDKAMPNKVGTYCIQFSFMMDKANILNSEQVIVDVLPNQPVKLVPEIQPATPAVSN
VRSVASRTLVRDLHLNITDDYNNRTGMNLVGTIIATIRGSNAEDIDTPLFNGKVRTLEFP
FVKGSAEITSLVLSENSPGKDSTEYFIVFEPQIPALSRTLESYILPFMFYNDVKKQQQMA
ALTKEKDQLSKSIVMYRSLFEASKQLVDEMKCQVEEAKLKEAQLRGELKTHNIDIPATQQ
VPHIEALLKRKLSEQEELKKRPRRSCTLPNYTKGSGDVLGKIAHLAQIEDDRAAVVISWH
LASDMDCVVTLTTDAARRIYNETQGRQQVLPLDSIYKKNLPDWKRPLPHYRNGKLHFKPI
GDPVFARTLLTFPDNVEHCETVFGMLLGDTILLDNLDAANHYRKEVVKITHCPTLLTRDG
DRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGDQIELLRQYRTAVCRLGTVNK
DLSGQLEYLHTPDMKKKKQELDEQEKSLKLIEQKLGMTPTNKSNDTRHQTKVEMTECLIP
PKRMRRESTRQSRIITKADV
NT seq
6003 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcgggcggcgggcccgcggccgagcctggcgaaggcggtggcggcggcgac
ggcagcaggaccgtgtacttgttcgaccggcgcgaggaggaggccgagctcggggaccgg
ccgctgcaggtcggggagcgccaggacttcgccggcttccgcgccgccgtgtgtcagaca
cttggcatttcaccggaagagaaatttgttattacaacaaccagtagaaaagaaattaca
tgtgataattttgatgaaactattaaggatggagtcactttatacctgctgcagtcagtc
aaccagttgctgctcacggctacaaaagagcgaattgacttcctacctcactatgacact
ctggttaaaagtggcatgtatgaatattatgcaagcgaaggacaaaaccctttgcccttt
gctcttgcagaattaattgacaattcattgtctgctacttctcgcaacaccggtattaga
cgaatacagattaagctgctttttgatgaaacacaaggaaaacctgctgttgcagtgata
gataatggaagaggaatgacctctaaacaacttaacaactgggctgtgtataggttgtca
aaattcacaaggcaaggtgactttgaaagtgatcattcaggatatgtccgtccggtacca
gtgccacgcagtttaaatagtgacatttcctattttggtgttgggggaaagcaggcagtg
tttttcgttggacaatcagccagaatgataagcaaacctgctgattctcaagatgttcat
gagcttatgctttctaaagaagattttgagaagaaggagaaaaataaagaggcaatatac
agtggatatattaggaacagaaagccttctgattctgttcacattacaaatgatgatgag
agatttctgcatcatcttatctcagaggagaaggataaagagagctttactgctgtgatc
atcacaggggtgcagccagatcacatactatacttgaaaaatcatttccatctttggaca
agacagttaacgcatatttatcattactatattcatggcccaaaaggaaatgaaaaacga
acatcccaagaagccggacctttcaacaatattgagattgaaatttctctgtttgaaaaa
gggaagacacctaaaattgtcaacttaagggaaatacaagatgacatgcagacactgtat
ataaacacagcatctgatagttttgagttcaaggctcatgttgaaggagatggtgtagta
gaagggattattcgatatcacccatttttatatgatagagaaacttaccctgatgatcca
tgctttccatcaaaattaaaggatgaagatgacgatgacgattttctcgtacttgataaa
gcagcaagaggtaaaaggcctatttttgaatgtttttggaatggacgactgataccatat
acatctgttgaagactttgactggtgtacacctcctaagaagagagggcttgcacccatt
gagtgctataatagaatatctggcgcattattcactaatgacaaattccaggtcagcaca
aataagctgacttttatggatcttgaactaaaattgaaagataagaacaccctttttaca
cggattttaaatggacaggaacagagaatgaaaattgacagagaatttgctttatggcta
aaggattgccatgaaaaatacgacaaacaaataaaatttacacttttcaaaggaataatt
acgcgtcctgatctaccttctaaaaaacagggtccctgggcaacgtactctgcaatagag
tgggatggaaaaatatacaaagcaggacaactggtcaagacaatcaagacacttcctctt
ttttatgggagcatagtcaaattttttctttatggtgaccacgatggtgaagtgtatgct
acaggaggagaagttcaaattgcaatggagcctcaggcactatatgatgaaataaaaact
attccaattgcaaagctggatagaacagttgctgagaaaactgtgaaaaaatatgtagaa
gatgaaatggcaaggctccctgatagattgtctgtaacttggcctgagggagatgaatta
ctgccaaatgaaacaagacctgctggaacccctattggtgcattaagaattgaaatactg
aataaaaaaggggaaacaatgcaaaagcttccaggaacaagtcatggagggtcaaagaaa
ctccttgttgagcttaaagttatattacactctccaaatggaaataaagaaataatttca
catattagtcagcatggaggaaaatggccatactggtttaaaaaaatggaaaatattcaa
aagttggggaactatacattgaaattacaagttgtattgaatgaaagtaatgcagacact
tacgcaggaagaccattaccttctaaagcaattaagttttctgttaaagagggtaagcca
gagaaattttcatttggtcttctggattctccttttcgtgttggagtcccattcaatatc
cctctggagtttcaggatgaatttggtcatactagtcaactagtaaatgatattcagcca
attcttgaagcaagtggtctatctttacattatgaagagataaccaaaggaccaaattgt
atgattcgaggcgttacagctaaaggccctgtaaactcctgtcaaggcaagaattttaat
ctgaaggttactctgccagggttaaaagaagactcgcagattttgaaaattaagttgtta
ccaggtctccctcatcgactgaaagtgaaacctgattctgaaattttagttatagaaaat
ggaaccgctttcccatttcaggttgaagtgttggatgaatcagacaatataacatcacaa
ccaaaactgattgttcattgtaagttttcaggtgctccaaatctgcccatctacgttgtg
gattgcagtagttctggaaccagtattttatcaggatctgcaattcaggttcagaatatt
aagaaagaccagatgcttaaagcaaaaatcgaaatacctagttgtaaaaatgtggcacct
gttgaaaagactattaaattgcttcctagtagccatgttgcaagattgcaaatattcagt
gtggaagggcagaaggctattcaaatcaaacaccaggatgagattaattggatagcaggt
gatgttatgcataatcttatttttcaaatgtatgatgaaggagagagagaaatccatata
acatcagctttggcagagaaaattaaggttaattggactcctgagattaataaagaacac
ttgctacagggtctgcttcctgatgtccaagtcccagcatcagtcaaagatatgcgctac
tgccaggtttcattccaagatgaccatgtgtctttggaaagtgcatttacagtaagacca
cttcctgatgaacctaaacatctaaaatgtgagttaaaaggtggaaaaacggtacggatg
ggtcaggagcttgaaggtgaaatcgttgtaatagttactgatcagtatgggaatcagatc
caagcattttcagagagttctttatctgccttgacgatagctggggttggacttgatagc
tcatatttgaaaactacttttcaggaaaacacacaaagtataagtgtcagaggcatcaag
tttattccaggtcctcctggaaataaggatctttgtttcacttggcgtgaattttcagac
tttattcgagtacagctagtttctggaccaccctctaaacttctccttgtagactggcca
gaattaaaggagtccattccagttattaacggaagagaactacagaatcctctcattgtt
caactttgtgatcagtgggataacccagcacctgtacctcaggttaaaataagcctcaca
aaagatagctgtttaaagctcactccttcaaatcaacagcataaaacagatgaaaagggc
agggctaatttgggagtattcagtgtttgtgcccctagaggagaacatacactgcaggtg
aaagccatctataacaagattaccatagatggaccaaaaattaagttaatgatccttcca
gatcctgaaaaacctatccgcatcaatgtgaaatatgataaagatgcttcctttttagca
ggaggtattttcactgattttataattactgtcatttctgaagatgaaagtaccattaag
aatattaatcctgcacgtatttctatgaaattgtggaagctatctaacagtggaagccga
cctccaccaaatgcagaaacatttagttgtaataaaataaaagacgacaaggaagatggt
tgcttttacttcagggataaagccatgcctaataaagtgggaacctattgtatccagttt
agttttatgatggataaagccaatattcttaacagtgaacaggttatagttgatgttctc
cctaatcagcctgtgaagttagttcctgaaatacagccagctacacctgctgtttcaaat
gttcgctctgttgccagcagaaccttggtccgagacttacaccttaatatcacggatgac
tacaataatcgaactggaatgaatttagttggcaccatcatagctaccatcaggggttct
aacgcagaagatattgacacaccactcttcaatggcaaagttaggacgcttgaatttccc
tttgtgaaaggttcagcagaaatcacgagtctagttctatcagaaaacagtcccgggaaa
gacagtactgaatactttattgtatttgagccacaaataccagctttatcaagaacatta
gaatcgtatatactaccatttatgttttacaatgacgttaagaaacagcagcaaatggca
gcacttacaaaagagaaggaccaattatctaaatctattgttatgtatagaagtttattt
gaagccagcaaacagcttgttgatgaaatgaagtgccaagttgaagaagcaaaattaaaa
gaggctcaattgcgaggtgaattgaaaacacataatattgacattcctgcaacacaacag
gtgccacacattgaagcacttttgaagagaaaactgtcagaacaggaagaactaaagaag
agacctagaagatcatgcactctcccgaactatactaaaggcagtggagatgttttggga
aagattgcacaccttgcacaaattgaggatgatagagctgcagtggtcatttcttggcat
ctggcaagtgacatggactgcgtggtcaccctgaccaccgatgctgcacgccgcatctac
aatgagacccagggtcgccagcaggtgctgccccttgattctatctataagaagaatctt
ccagattggaaaagaccgctacctcattatcgaaacggaaaattacattttaaacccatc
ggagatccagtctttgcccgaactttgttaacgtttccagataatgtagagcattgtgaa
acagtatttggtatgctgttaggagacaccattcttttggataatttggatgctgccaat
cattatagaaaagaggttgttaaaatcacacactgtcctacactgttaaccagagatgga
gatcgcattcgaagtaatgggaagtttgggggccttcagaataaagctcctccaatggat
aaacttcgagggatggtatttggagctccagtacccaaacagtgcctcgtcttaggggac
caaatagagcttctccggcagtaccgcactgctgtgtgcagattgggcaccgtgaacaag
gatcttagtggccagcttgagtaccttcacactccggatatgaagaagaaaaagcaggaa
ctggatgaacaggagaaaagtctgaaacttatagaacaaaagctaggtatgactcccaca
aataaaagtaatgatacacgtcatcaaacaaaagttgaaatgactgaatgtctgattcct
cctaagagaatgagaagagaatctacaagacaaagtaggattataaccaaagcggatgtg
tga
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