Streptomyces fagopyri: GFH48_04045
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Entry
GFH48_04045 CDS
T06986
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfy
Streptomyces fagopyri
Pathway
sfy03030
DNA replication
sfy03410
Base excision repair
sfy03420
Nucleotide excision repair
sfy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GFH48_04045 (ligA)
03410 Base excision repair
GFH48_04045 (ligA)
03420 Nucleotide excision repair
GFH48_04045 (ligA)
03430 Mismatch repair
GFH48_04045 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfy03032
]
GFH48_04045 (ligA)
03400 DNA repair and recombination proteins [BR:
sfy03400
]
GFH48_04045 (ligA)
Enzymes [BR:
sfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GFH48_04045 (ligA)
DNA replication proteins [BR:
sfy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GFH48_04045 (ligA)
DNA repair and recombination proteins [BR:
sfy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GFH48_04045 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GFH48_04045 (ligA)
MMR (mismatch excision repair)
DNA ligase
GFH48_04045 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GFH48_04045 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DNA_ligase_ZBD
HHH_3
BRCT_2
DIP2311-like_C
Motif
Other DBs
NCBI-ProteinID:
QFZ72545
UniProt:
A0A5Q0L653
LinkDB
All DBs
Position
936002..938116
Genome browser
AA seq
704 aa
AA seq
DB search
MTGMTSPAAVIVDAVAYAQAVEDAVRASAAYYTGGTSVLDDDAYDRLVRGIAAWEAEHPG
EVLADSPTGKVAGGAVEGDVPHTVAMLSLDNVFSAEEFTAWTASLARRTGHDATRFSVEP
KLDGLAIAARYTHGRLERLITRGDGTAGEDVSHAVGTVEGLPQRLAEPVTVEVRGEVLMS
TAQFEYANEVRTQHGGQPFANPRNAAAGTLRAKDRAYTVPMTFFGYGLLPLPDTDGALAE
RLTELAHSDLMALAGVYGVNTTATTAVPGVIAETAEEVLARVKEIAALRAELPFGIDGIV
IKADLAADQRAAGSGSRAPRWAIAYKLPAVEKITRLLGVEWNVARTGIIAPRAVLEPVEI
DGSTITYATLHNPADITRRDLRLGDHVMVHRAGDVIPRVEAPVAHLRTGAEEPIVFPEAC
PRCGSAIDTGEQRWRCANGRNCHLVAALSYAAGRDQLDIEGLGSTRVVQLVEAGLVADLA
DLFALTREQLLGLERMGETSTDNLLAAITAAKGQPLSRVLCALGVRGTGRSMSRRIARYF
ATMDLIRAADAETLQRVEGIGTEKAPSIVAELAELAPLIDRLTAAGVNMTEPGATAPAPA
TEPGEATGDDGDADGAGGPGGGPLSGMTVVVTGAMTGALEKLSRNQMNELIERAGGRSSS
SVSKKTTLVVAGANAGSKRAKAEDLGIRLAGPEEFATLVADFLG
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgacgggtatgacatcaccagctgcagtgatcgtggacgccgtcgcctacgcgcaggcg
gtcgaggacgcggtgcgggcgtcggccgcctactacacgggcggcacgtcggtactggac
gacgacgcctacgatcggttggtgcgcggcatcgcggcgtgggaggcggagcaccccggg
gaggtgctcgccgactcgccgacgggcaaggtcgccggcggcgccgtggagggcgacgtc
ccgcacacggtggcgatgctgagcctggacaacgtcttctcggccgaggagttcaccgcg
tggaccgcgtcgctggcccgccggaccggtcatgacgccacccggttcagcgtggagccg
aagctggacggcctcgcgatcgccgcccgctacacccacggccgcctggagagactgatc
acccggggcgacgggacggccggggaggacgtctcgcacgccgtcggcaccgtcgagggc
ctgccgcagcggctcgccgagcccgtcacggtggaggtgcgcggtgaagtcctgatgtcc
accgcccagttcgagtacgccaacgaggtgcgcacccagcacggcggacagccgttcgcg
aacccgcgcaacgccgcggcgggcaccctgcgcgccaaggaccgcgcctacaccgtgccg
atgaccttcttcgggtacggcctgctgccgctgcccgacacggacggcgctctcgcggag
cgcctgaccgagctggcgcacagcgacctcatggctctggccggcgtgtacggggtcaac
accacggccaccaccgccgtgcccggcgtcatcgccgagaccgccgaggaggtcctggcc
cgcgtcaaggagatcgcggcgcttagagcggagctgcccttcgggatcgacgggatcgtg
atcaaggccgacctggccgccgatcagcgggccgccggatcgggttcgcgggccccgcgc
tgggccatcgcctacaagctgcccgcggtcgagaagatcacccggctgctgggggtcgag
tggaacgtggcccgcacgggcatcatcgccccgcgcgccgtcctggagccggtcgagatc
gacggttcgaccatcacctacgccacgctgcacaatcccgcggacatcacccgccgcgat
ctgcgcctgggcgaccacgtcatggtgcaccgcgccggtgacgtcatcccccgtgtcgaa
gccccggtcgcccatctgcgcaccggcgccgaggagccgatcgtcttccccgaggcatgc
ccgcgctgcgggtccgccatcgacaccggtgagcagcgctggcgctgtgcgaacggccgc
aactgccacctggtcgccgccctctcctacgccgccggacgcgaccagctcgacatcgag
ggcctcggctccacgcgcgtcgtccagctcgtcgaagccggcctggtcgccgacctcgcc
gatctgttcgccctcacccgcgagcagctcctggggctggagcggatgggtgagaccagc
accgacaacctcctcgccgcgatcaccgcggccaagggacagccgttgtcacgcgtgttg
tgcgcgctgggtgtccgcggcaccggacgctccatgtcccgccgtatcgcccggtacttc
gccaccatggacctgatccgcgccgccgatgccgagacgctgcagcgggtcgagggcatc
ggcaccgagaaggccccgtccatcgtcgccgagctcgccgaactggccccgctcatcgac
agactcacggccgccggggtcaacatgaccgaaccgggcgccaccgcgccggcccccgcg
accgaaccgggcgaggccaccggcgacgacggggacgccgacggggcgggcggaccgggc
ggcggcccactgtccgggatgacggtcgtggtcaccggcgccatgaccggcgccctggag
aagctcagccgcaaccagatgaacgagctcatcgaacgcgccggtggccgctcctcctcc
agcgtctccaagaagaccaccctggtcgtcgcgggagccaacgccgggtccaagcgcgcc
aaggccgaggacctgggcatccgtctggccggccccgaggagttcgccacgctcgtcgcc
gacttcctcggctga
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