Spiroplasma floricola: SFLOR_v1c01120
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Entry
SFLOR_v1c01120 CDS
T05283
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sfz
Spiroplasma floricola
Pathway
sfz03030
DNA replication
sfz03410
Base excision repair
sfz03420
Nucleotide excision repair
sfz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sfz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SFLOR_v1c01120 (ligA)
03410 Base excision repair
SFLOR_v1c01120 (ligA)
03420 Nucleotide excision repair
SFLOR_v1c01120 (ligA)
03430 Mismatch repair
SFLOR_v1c01120 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sfz03032
]
SFLOR_v1c01120 (ligA)
03400 DNA repair and recombination proteins [BR:
sfz03400
]
SFLOR_v1c01120 (ligA)
Enzymes [BR:
sfz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SFLOR_v1c01120 (ligA)
DNA replication proteins [BR:
sfz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SFLOR_v1c01120 (ligA)
DNA repair and recombination proteins [BR:
sfz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SFLOR_v1c01120 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SFLOR_v1c01120 (ligA)
MMR (mismatch excision repair)
DNA ligase
SFLOR_v1c01120 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SFLOR_v1c01120 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
HHH
Guanylate_kin
DUF1510
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AUB31173
UniProt:
A0A2K8SCK5
LinkDB
All DBs
Position
117939..119933
Genome browser
AA seq
664 aa
AA seq
DB search
MKDIKNRIEKLKEDLNEWNYAYYVLDNPIVDDSEYDKYLNELIMLETDNPEFKTDDSPTQ
KVGGQVMDKFEKYKHKLPMLSLSNAFNKDDLETFDEQIFKEIESKKYNFFVEPKIDGLSI
SLIYKNGNFFKGVTRGDGIYGEDVTSNVKTIKSIPLSISDKSDYVEIRGEVFLSKVEFEK
INKQRQNNDEELFANPRNAAAGTLRQLDSSIAASRKLDAFLYYFMNREKFHTHSESLNYL
EKMNFKVNKLGKICNDIEEVYNHIKFIELQREKLEYEIDGVVIKINDFDLYEKVGYTAKS
PKWAIAFKFPAEVKETLLKNIYATVGRTGRITYNATLEPVQISGTIVQAATLHNADFIIQ
RDIRIGGKVKIKKAGDIIPEVIEPIQDNKYKSLTKWVEEIKCPVCNSNLERVEGEVDQYC
INFECPRKIIRGLEHFVSRDAMNIEGLSIKIIEKLFENKFIKNVADIYKLSKFKDELIQL
DKMGEKSVSNLLESIEKSKNSSLEKLFFGLGIRHVGKKTAKTLAISFKTMENISKINFEE
LEQINDVGPIVAKSVCDWFEIKQNLQLINKLKEENINMIYLGNEGSKNNDKITLKSFVIT
GTLSKPRNYFKDLLEEYGAKVIDTVSKKTDFLLAGKEAGSKLEKAEKLGVKIISEESLLE
MIGE
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatattaaaaatagaattgaaaaattaaaagaagatctaaatgaatgaaattat
gcgtattatgttttggataaccctatagttgatgattctgaatatgataagtatttaaat
gaattaataatgttagaaacagataatccagaatttaaaactgatgactcaccaacacaa
aaagtaggtggtcaggtaatggataaatttgaaaagtataaacataaattgccaatgtta
agtttatctaatgcatttaataaagatgacttagaaacttttgatgaacaaatttttaaa
gaaattgaaagtaaaaaatataacttttttgttgaacctaaaattgatggattatcaatc
tcgttaatttataaaaatggtaacttttttaaaggtgtaacaagaggtgatggaatttat
ggtgaagatgtaacttcaaatgttaaaacaataaaaagtattcctttatcaatttcagat
aaaagtgattatgttgaaattagaggagaagtatttttatctaaggttgaatttgaaaaa
ataaataaacaaagacaaaataatgatgaagaattatttgccaatccaagaaatgctgct
gcaggaactttaagacaattagattcgtctattgcagcttcaagaaaacttgatgctttt
ttatattattttatgaatagagaaaaatttcatacacatagtgagtcactaaattattta
gagaaaatgaattttaaagtaaataaattaggaaaaatctgtaatgatattgaagaagtt
tacaatcatattaaatttattgaattgcagagagagaaattagaatatgaaattgatgga
gtagtaatcaaaataaacgattttgatctttatgaaaaagtgggatatactgcaaaatct
ccaaaatgagctatagcctttaaatttccagctgaagttaaagaaacattattaaaaaat
atttatgctactgtaggaagaacgggaagaataacttataacgctactttagagccagtt
caaatttcaggaactattgtccaagctgcaactttacataatgcagattttattattcaa
agagatataagaattgggggaaaagttaaaataaaaaaagcaggagatataattcctgaa
gtaattgaacctatccaggataataagtataaaagtttaaccaaatgagttgaagaaata
aaatgtcctgtatgtaactcaaatttagaaagagttgaaggagaagtagatcaatattgt
atcaattttgaatgtccaagaaaaattattagaggacttgaacattttgtttctagagat
gcaatgaatattgaaggtctaagtattaaaattattgaaaagctttttgaaaataagttt
attaagaacgttgcagatatttataaattaagtaaatttaaagatgaacttattcaacta
gataaaatgggagaaaaatctgtgtctaatttattagaatcaattgaaaaatcaaaaaat
agctcattggaaaaattattttttggtttaggaattagacatgtaggtaaaaaaactgca
aaaactttagcaataagttttaaaacaatggaaaatatctcaaaaataaactttgaggaa
ttagaacaaattaatgatgtaggacctattgttgcaaaatcagtttgtgattgatttgaa
ataaaacaaaatttgcaattaatcaataaattgaaagaagaaaatattaatatgatttat
ttaggcaatgaaggttcaaaaaataatgataaaataactttgaaaagttttgttataaca
ggtacattaagcaaacctagaaattattttaaagacttacttgaagagtatggagctaag
gtaattgatacagttagcaaaaaaacagattttttattagcaggtaaagaagctggtagt
aaattagaaaaagctgaaaaattaggagtcaaaattatttcagaagaaagtttattagaa
atgattggtgaataa
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