Streptococcus gallolyticus UCN34: GALLO_0779
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Entry
GALLO_0779 CDS
T01171
Symbol
ligA
Name
(GenBank) DNA ligase (NAD-dependent)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sga
Streptococcus gallolyticus UCN34
Pathway
sga03030
DNA replication
sga03410
Base excision repair
sga03420
Nucleotide excision repair
sga03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sga00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GALLO_0779 (ligA)
03410 Base excision repair
GALLO_0779 (ligA)
03420 Nucleotide excision repair
GALLO_0779 (ligA)
03430 Mismatch repair
GALLO_0779 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sga03032
]
GALLO_0779 (ligA)
03400 DNA repair and recombination proteins [BR:
sga03400
]
GALLO_0779 (ligA)
Enzymes [BR:
sga01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GALLO_0779 (ligA)
DNA replication proteins [BR:
sga03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GALLO_0779 (ligA)
DNA repair and recombination proteins [BR:
sga03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GALLO_0779 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GALLO_0779 (ligA)
MMR (mismatch excision repair)
DNA ligase
GALLO_0779 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GALLO_0779 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
RTT107_BRCT_5
Rotamase_3
5_3_exonuc
RNA_lig_T4_1
Motif
Other DBs
NCBI-ProteinID:
CBI13271
UniProt:
A0AA36NPY9
LinkDB
All DBs
Position
818252..820210
Genome browser
AA seq
652 aa
AA seq
DB search
MKKRIQELVDELNQYRKEYYTEDQPTVSDSEYDKLYRELVELEKAHPELILPNSPTQEVG
GLVLDGFEKYQHETPLYSLQDAFSREELEDFDRRVKAEFPNASYMAELKIDGLSISLVYV
DGVLQVGATRGDGSVGENITENVKRIKDIPHKLAQPLNITVRGEAYLPKTSFDKINKERR
DSGQTEFANPRNAAAGTLRQLNTVVVAKRNLATFLYQEVASTSMTTQNDVLEELSRYGFS
VNPRRITTSSMADIWKFIQEVAAERDNLPYDIDGIVIKVNSLAMQEELGFTVKAPRWAIA
YKFPAEEKEAEILSVDWTVGRTGVVTPTANLSPVQLAGTMVSRATLHNVDYIAEKDIRIG
DTVIVYKAGDIIPAVLHVVDSKRDKQVPMPIPESCPSCGSELIHYEDEVALRCINPLCPS
QIQERLTHFASRDAMNITGLGPSIVKKLFKVELVHDVADIYQLTVEDLLSLDGFKEKSAE
KLYNAIQVSKENSADKLLFGLGIRHVGAKASRQLLEVFETIDQLVAADADSIASIDGLGT
VIANSLRSYFAKKEATELLHELKNAGVNFAYLGKKVSKDAQLAGLTVVLTGKLERLTRNE
AKEKLQDLGAKVTNSVSKKTDIVVAGTDAGSKLTKAQALGIDVRDEAWLESL
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaacgtattcaagaattggttgatgagctcaaccagtaccgaaaagagtattac
acagaggaccaaccaacggtctcagatagtgaatatgacaagctttatcgcgagttagtc
gagcttgaaaaagctcatccagagttgattttgccaaatagtccaacgcaagaagtgggt
gggcttgttttagatggttttgaaaaatatcagcatgaaacaccgctttatagcttgcaa
gatgctttttcacgtgaggaattagaggattttgaccgtcgtgtgaaagctgaatttccc
aatgcctcttacatggcagagctgaaaattgatggtttgtcaatttcactagtttatgtt
gatggtgtgttgcaagtcggtgccactcgtggtgacggctcagttggtgaaaatatcact
gaaaatgtcaaacgtatcaaggacattcctcataaattggcacagccacttaacattaca
gttcgtggtgaagcttatttgccaaagacatcatttgataaaatcaataaggaacgtcgt
gatagtggtcagacagaatttgcgaatccgagaaatgcggctgcagggacattacgtcag
ttaaatacagtagttgttgctaagcgaaatttggcaacatttctttatcaagaagtggca
tcgactagcatgacaacgcaaaatgatgttttggaggaattgtctcgctatggtttttcg
gttaatccgcgacgtatcacgacatcttcaatggcagacatctggaaatttatccaagaa
gtagccgctgagcgtgataatttaccatacgatattgacggtattgttattaaggtcaat
agtcttgctatgcaagaagaacttggctttacggtcaaggcgcctcgttgggcaattgct
tataaattcccagctgaggaaaaagaagcagaaattctttcggttgattggactgttgga
cgtactggggtggtgacaccaaccgctaatcttagccctgttcagttagcaggaacaatg
gttagccgtgcgactttgcataatgtggattacattgctgaaaaagatattcgcattggc
gatacggttatcgtctataaggcgggagatattattccagcggtgctgcatgttgttgat
agcaaacgtgataagcaagtaccaatgccgattcctgaaagctgtccgtcttgtggcagt
gagttgattcactatgaagatgaggtggctttacgttgtatcaatccgctttgtccaagt
caaattcaagaacgtttaacgcattttgccagccgtgatgccatgaatatcacaggttta
ggaccttctatcgttaagaaacttttcaaagtagaattggttcatgatgtcgcagacatt
taccaattaacggtggaagatttgctaagcttggatggctttaaggaaaaatctgctgag
aaactttacaatgccattcaggtttctaaggaaaattcagctgataaattgctttttgga
ctgggaattcgtcatgtcggtgccaaggctagtcgtcaattgttggaagtttttgaaacg
attgatcagttggttgctgcggatgctgacagcattgctagtatcgacggtttgggaaca
gttattgctaactcattgcgcagctattttgccaaaaaagaagcgacagagctcttgcat
gaattgaaaaatgcaggtgtcaactttgcttatcttggtaaaaaagtttcaaaagatgct
caattagcaggtttaacagttgttttgactggaaaattggaacgtttaacacgaaacgaa
gcaaaagaaaaactgcaagatttaggagcaaaagtgaccaacagcgtgtccaaaaagacg
gacattgttgtcgcaggtacagatgcaggttcaaaattgaccaaagcccaagctttagga
attgatgttcgcgatgaagcttggttagaaagtttataa
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