Staphylococcus gallinarum: K3U27_12610
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Entry
K3U27_12610 CDS
T10418
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgai Staphylococcus gallinarum
Pathway
sgai03030
DNA replication
sgai03410
Base excision repair
sgai03420
Nucleotide excision repair
sgai03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K3U27_12610 (ligA)
03410 Base excision repair
K3U27_12610 (ligA)
03420 Nucleotide excision repair
K3U27_12610 (ligA)
03430 Mismatch repair
K3U27_12610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgai03032
]
K3U27_12610 (ligA)
03400 DNA repair and recombination proteins [BR:
sgai03400
]
K3U27_12610 (ligA)
Enzymes [BR:
sgai01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K3U27_12610 (ligA)
DNA replication proteins [BR:
sgai03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K3U27_12610 (ligA)
DNA repair and recombination proteins [BR:
sgai03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K3U27_12610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K3U27_12610 (ligA)
MMR (mismatch excision repair)
DNA ligase
K3U27_12610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K3U27_12610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
BRCT_2
A24_N_bact
Motif
Other DBs
NCBI-ProteinID:
UEH00543
LinkDB
All DBs
Position
2653595..2655598
Genome browser
AA seq
667 aa
AA seq
DB search
MAELQTRVETLHKLLNQYSYEYYVQDNPSVPDSEYDKLLHELIDIEAEHPELRSPDSPTV
RVGGSAQSTFEKVAHDTPMLSLGNAFNEEDLRKFDQRIRDLIGPVEYMCELKIDGLAVSL
KYENGRFVQGLTRGDGTIGEDITENLRTIHAIPLKINDTRTFEVRGEAYMPRQSFINLNE
EKEKNDEQPFANPRNAAAGSLRQLDSKLAAKRKLSVFLYSVNDFTQFNAVTQSEALDELD
ELGFKTNHERQRVETIDEVLQYIEKWTAQREDLPYDIDGIVIKVNAIDQQDELGFTQKSP
RWAIAYKFPAEEVITKLKDIELSIGRTGVVTPTAVLEPVKVAGTTVSRASLHNEDLIHEK
DIRIGDSVIIKKAGDIIPEVIKSVIDRRPEDATVYHMPTHCPSCDHELVRIEGEVALRCI
NPKCQAQLVEGMIHFVSRQAMNIDGLGTKIIQQLYENEKIKDVADIFYLTAEDLLPLERM
GEKKVNNLLTAIENAKSNSLEQLLFGLGIRHLGVKASRVIAEKYGSIDKLFEVTEEEFTS
IHDIGHKLAQSVVTYLENEDIRALIDKLKAKNVNMLYKGVKVSEVEGHPEFNDKTIVLTG
KLQQMTRSEASKWLENHGAKVTSSVTKSTDLVIAGEDAGSKLTKAEKFGTEVWSEEEFMN
KQKEIEG
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
ttggcagagttacaaacacgtgtagaaacgttacacaaattattaaaccaatatagttac
gaatactatgtacaagataacccatcggtacccgatagtgaatatgataaattattacat
gaattaatcgacattgaagcagaacatccagaattgcgttcaccagattcaccaacagta
agagttggtgggtcggcgcaatctacatttgaaaaggttgcacatgatacaccaatgttg
agtttaggcaatgcatttaatgaagaagatttgcgcaaatttgatcagcgtatcagggac
cttattggtccagttgaatatatgtgcgaattgaaaattgatggattagccgtttctctt
aaatatgagaatggtcgtttcgtacaaggcttaacacgtggcgatgggacgattggtgaa
gacattacagaaaatttacgtaccattcatgcgataccattaaaaatcaacgatacgcga
acttttgaagttcgtggtgaggcatacatgccacgtcaatcatttattaatttaaatgaa
gaaaaggaaaaaaatgatgagcaaccatttgccaatccacgaaatgctgcagcaggttca
ttacgccaattagattctaaattagcggccaaacgtaaattgagcgtatttttatatagt
gtcaatgactttacacagtttaatgctgttacacaaagtgaagcgttagatgagttagat
gaactaggatttaaaacgaatcacgaacgccaacgtgtagaaacgatagacgaagtttta
caatatattgaaaaatggacagcacagcgtgaggatttaccttatgacattgacggtata
gttataaaggttaatgctattgaccaacaagatgaattaggttttactcaaaaatcgcca
agatgggccattgcatataagtttccagctgaagaagtgattacaaagctaaaagatatt
gaactaagtattgggcgaactggcgtagtcacaccaactgcagtattagaacctgttaaa
gttgcagggacaacagtatcacgtgcctcgttacataatgaagacttaatacatgaaaaa
gacatcagaattggtgacagtgtaattatcaaaaaggctggagatatcattccggaagtt
ataaaaagtgttatcgacagaagacctgaagatgcgactgtttatcacatgcctacgcat
tgtccaagttgtgaccatgaacttgttcgtattgaaggagaggtagcacttagatgtatc
aatcctaaatgtcaggcacaattggtagaaggtatgattcattttgtttctagacaagca
atgaatattgatggtttaggtacgaaaattattcaacaattatatgaaaacgaaaaaatt
aaagatgtagcagatattttttatctaacggcagaagacctattaccactagagagaatg
ggtgaaaagaaagtcaataatcttttaactgcgattgaaaatgctaaatctaattctcta
gaacaattactttttggtttaggtatacgacatctaggggtaaaggcgagtagagttatt
gctgaaaaatatggctctatcgataaattatttgaagtaaccgaagaagaatttaccagt
attcatgatattggtcataaactcgctcaatcagtggttacatatttagaaaatgaagat
attcgtgcgctaattgataaacttaaagcgaaaaatgttaatatgctttacaaaggtgtg
aaagtttctgaagtggaaggtcaccctgagttcaatgataaaacaattgtattgaccggt
aagttacaacagatgactagaagtgaagcttctaaatggttagaaaatcatggtgctaag
gtgacaagtagtgtcactaagagtacagatttagttattgctggtgaagatgctggttca
aaattaacaaaagctgaaaagtttggtactgaagtctggtcagaagaagagtttatgaat
aaacaaaaagaaattgagggatag
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