Streptomyces griseoviridis: ELQ87_12085
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Entry
ELQ87_12085 CDS
T06660
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgd
Streptomyces griseoviridis
Pathway
sgd03030
DNA replication
sgd03410
Base excision repair
sgd03420
Nucleotide excision repair
sgd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ELQ87_12085 (ligA)
03410 Base excision repair
ELQ87_12085 (ligA)
03420 Nucleotide excision repair
ELQ87_12085 (ligA)
03430 Mismatch repair
ELQ87_12085 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgd03032
]
ELQ87_12085 (ligA)
03400 DNA repair and recombination proteins [BR:
sgd03400
]
ELQ87_12085 (ligA)
Enzymes [BR:
sgd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ELQ87_12085 (ligA)
DNA replication proteins [BR:
sgd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ELQ87_12085 (ligA)
DNA repair and recombination proteins [BR:
sgd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ELQ87_12085 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ELQ87_12085 (ligA)
MMR (mismatch excision repair)
DNA ligase
ELQ87_12085 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ELQ87_12085 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
AZS84940
UniProt:
A0A3Q9KSH7
LinkDB
All DBs
Position
complement(2807549..2809822)
Genome browser
AA seq
757 aa
AA seq
DB search
MAGDKQADTTVPSEAREKHAQLAERIEEHRFRYYVNDAPVVSDADFDELLRSLEALEEEY
PQLRTPDSPTQKVAGAYQTDFTSVRHRTRMLSLDNAFNDEELAAWAERIAKDVGTTDYHL
LCEPKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTITEIPDRLAGTVVPDLVEI
RGEVYFPMEEFQALNARLVEAGEKPFANPRNAAAGSLRQKDPRVTAGRPLHMVVHGIGAL
EGYEGLTRLSQAYDLLRSWGLPTGRHNKVVEGLDGVRGFITYFGENRHSVEHEIDGAVIK
LDEIALQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEPVTVAG
SEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSERPFAMPAECPE
CGTPLRPMKEGDVDLRCPNARSCPAQLRERLFYLAGRKALDIENFGYVSAAALTRPLEPA
ESPLRDEGDLFDLTIEQLLPIKAYVLDQDSGLPKRDPKTGEEKVATVFANQQGEPRKNAL
AMLENIAAAKERPLARVLTGLSIRHVGPVAAEALAREFRSIERIERATEEELSNTDGVGG
IIAASLKEWFAEEWHQEIIRKWRAAGVRMEEEGSGEDEGPRPLEGLTVVVTGTLERFTRD
GAKEALQTRGAKVTGSVSKKTSFVVVGENPGSKHDKAVQLKVPVLDEAGFEILLERGPDA
AAEVALRDEQTGEQAGEPTGEQAPAEGEAQAEGQAEA
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggatacgacggtgcccagtgaggcacgggagaagcacgcg
cagctcgctgagcggatcgaggagcaccgcttccggtactacgtgaacgacgccccggtc
gtcagcgacgcggacttcgacgaactcctgcgctccctggaggcgctggaggaggagtac
ccgcagctgcgcaccccggactccccgacccagaaggtcgcgggcgcctaccagacggac
ttcacgtccgtgcgccaccgcacccggatgctctccctcgacaacgccttcaacgacgag
gagctggccgcctgggcggagcggatcgccaaggacgtcggcaccaccgactaccacctg
ctctgcgagccgaaggtcgacggcctcgccgtcaacctcacctacgagcacggccgtctg
acccgcgccgcgacccgcggcgacggccgcaccggcgaggacatcacccccaacgtccgc
accatcaccgagatcccggaccggctcgccggcacggtggtgcccgacctcgtggagatc
cgcggcgaggtctacttcccgatggaggagttccaggccctcaacgcccggctggtcgag
gcaggcgagaagcccttcgccaacccccgcaacgcggcggccggttcactgcgccagaag
gacccgcgggtcaccgcgggacgcccgctgcacatggtcgtccacggcatcggcgccctg
gagggctacgagggcctcacccgcctctcccaggcgtacgacctcctcaggtcctggggc
ctgcccaccggccgccacaacaaggtggtcgaagggctcgacggcgtacgcgggttcatc
acctacttcggtgagaaccggcactccgtggagcacgagatcgacggcgccgtcatcaag
ctcgacgagatcgccctccagggcaggctcggctccacctcccgcgcgccgcgctgggcc
atcgcgtacaagtacgcgcccgaggaggtcaacaccaagctcgtcaacatccgggtgggc
gtcggccgcaccggcagggtcacgccgtacgcgcaggtcgagccggtcacggtcgccggt
tccgaggtcgagttcgccaccctgcacaaccaggacgtcgtcaaggccaagggcgtcctc
atcggcgacaccgtggtgctgcgcaaggccggtgacgtcatcccggagatcctcggcccg
gtcgccgacctgcgcgacggcagcgagcgcccgttcgcgatgcccgccgagtgccccgag
tgcgggaccccgctcaggccgatgaaggagggcgacgtcgacctgcgctgccccaacgcc
cgcagctgccccgcccagttgcgcgagcgcctgttctacctcgcgggccgcaaggcgctg
gacatcgagaacttcggctatgtctccgcggcggccctcacccggccgctcgagcccgcc
gagtcaccgctgagggacgagggcgacctcttcgacctcaccatcgagcagctgctgccg
atcaaggcgtacgtcctcgaccaggacagcgggctgccgaagcgggacccgaagaccggc
gaggagaaggtcgccaccgtcttcgccaaccagcagggcgaaccccgcaagaacgccctc
gcgatgctggagaacatcgcggccgccaaggaacgcccgctggcccgggtcctcaccggc
ctgtcgatccgtcatgtcggtccggtcgccgccgaggcgctggcccgcgagttccgctcg
atcgagcgcatcgagcgggccaccgaggaggagctgtcgaacaccgacggcgtgggcggc
atcatcgccgcctccctcaaggagtggttcgccgaggagtggcaccaggagatcatccgc
aagtggcgggcggccggtgtgcggatggaggaggagggctcgggcgaggacgagggcccg
cgccccctcgaagggctcaccgtcgtcgtcaccggcaccctcgaacggttcacccgcgac
ggcgccaaggaggccctccagacccggggcgccaaggtgaccggatcggtctccaagaag
acgtcgttcgtggtcgtcggcgagaaccccggctcgaagcacgacaaggcggtgcagctc
aaggtgccggtgctcgacgaggcggggttcgagatcctgctggagcggggaccggacgcc
gcggccgaggtcgccctccgggacgagcagaccggcgagcaggccggcgaaccgaccggc
gagcaggccccggcggagggcgaggcgcaggccgaggggcaggccgaggcgtag
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integrated database retrieval system
