Stenotrophomonas geniculata: RKE57_13525
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Entry
RKE57_13525 CDS
T09411
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgen
Stenotrophomonas geniculata
Pathway
sgen03030
DNA replication
sgen03410
Base excision repair
sgen03420
Nucleotide excision repair
sgen03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgen00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RKE57_13525 (ligA)
03410 Base excision repair
RKE57_13525 (ligA)
03420 Nucleotide excision repair
RKE57_13525 (ligA)
03430 Mismatch repair
RKE57_13525 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgen03032
]
RKE57_13525 (ligA)
03400 DNA repair and recombination proteins [BR:
sgen03400
]
RKE57_13525 (ligA)
Enzymes [BR:
sgen01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RKE57_13525 (ligA)
DNA replication proteins [BR:
sgen03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RKE57_13525 (ligA)
DNA repair and recombination proteins [BR:
sgen03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RKE57_13525 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RKE57_13525 (ligA)
MMR (mismatch excision repair)
DNA ligase
RKE57_13525 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RKE57_13525 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
WNF12679
LinkDB
All DBs
Position
complement(2915622..2918093)
Genome browser
AA seq
823 aa
AA seq
DB search
MPMSPSPAERAEDLRRQIAQANRAYHELDAPEIPDVDYDRMVRELEALEREHPELARADS
PTQQVGARPSGRFPEVRHAVPMLSLSNAFSDEEVADFVRRIDERLGRRSLRFSAEPKMDG
LAISLRYEEGHFVLGATRGDGSTGEDVTANLREIGDIPKRLHGKDWPDVLEVRGEVYMAR
ADFEAYNERARQHGGKVLANPRNAAAGSLRQLDPKISAQRRLSFFAYGTGEVQGGELPDT
HSGTLAQLGTWGFPVSELCKVVDGTDGLLGYYRDIGERRDGLPFDIDGVVYKLDDRAGQQ
AMGFVSRAPRWAIAHKFPAQEQSTTVEAIEIQIGRTGAATPVARLAPVAVAGVIVSNATL
HNADQIARLDVRVGDSVIVRRAGDVIPEVVSVILDRRLQGTTPWQMPTRCPVCGSEIVRE
EGAAAWRCSGELSCPAQRKEAIAHFASRRAMDIDGLGDKYIETLVDAGIVKSVADLYRLS
RDQLLHLKLVLDAEDPSALAAALKLHLPAEGSGVVLNAVLKLDGNDPGWRARALVQPASF
EWNTKKIATKWADNLIAAIDASRDATLERLLFALGIEHVGESTAKALAQWFGDLELIRHL
PWPLFKRVPDIGGEVARSLGHFFEQQGNQQAIDDLLQVGQVRISDVHAPSAKLREGLDLA
QLLVESEIPGITRLRAEKLVAALPGAQAVLDAEHGQFVNAGLPDDTARGLAEWLDAEGHG
AMLLAAEKAMQQILAKAPALAEIVAGPLDGQTVVLTGTLAQLTRDAAKERLEALGAKVSG
SVSKKTSFVVAGTEAGSKLDKAQSLGVPVWDEDRLLAYLAEHE
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atcccgatgagccccagcccagccgaacgcgccgaagacctccgccggcagatcgcccag
gccaaccgcgcctaccacgagctggacgcgccggagatccctgacgtcgactacgaccgg
atggtgcgcgagctggaagcgctggagcgcgagcacccggaactggcccgtgccgacagc
ccgacccagcaggtcggtgcgcggccctccggccgtttcccggaggtgcgccacgcggta
ccgatgttgtcgctgtccaatgccttcagcgatgaagaagtggccgatttcgtgcgccgc
atcgatgagcgcctgggtcgtcgcagcctgcggttctcggccgagccgaagatggacggc
ctggcgatcagcctgcgctacgaagagggtcatttcgtgctcggcgcgacccgtggcgat
ggcagtaccggcgaggacgtgaccgccaacctgcgcgagatcggtgacattcccaagcgc
ctgcacggcaaggactggccggatgtgctggaggtacgcggcgaggtctacatggcgcgc
gccgatttcgaggcctacaacgaacgtgcacgccagcacggtggcaaggtgctggccaat
ccgcgcaacgccgcggccggctcgctgcgccagctcgatccgaagatcagtgcgcagcgc
aggctgagtttcttcgcctacggcaccggcgaagtgcagggcggcgaactgccggacacc
cattcgggcaccctggcccagctcggtacctggggcttcccggtcagtgagctgtgcaag
gtggtggacggcaccgacggcctgctcggctactaccgcgacatcggtgagcgccgcgat
ggcctgccgttcgatatcgatggcgtggtctacaagctcgatgaccgtgcgggtcagcag
gcgatgggcttcgtttcgcgcgcgccgcgctgggccatcgcgcacaagttcccggcgcag
gaacagagcactaccgtggaggcgatcgagatccagatcggccgcactggtgcggccacg
ccggtcgcgcgcctggcgccggtggcggtggccggcgtgatcgtgtccaacgccacgctg
cacaacgccgaccagatcgcacgcctggatgtgcgcgtcggcgacagcgtgatcgtgcgc
cgtgctggcgatgtcattcccgaagtggtcagcgtcatcctcgaccgccgcctgcagggc
accacgccgtggcagatgccgacgcgctgcccggtctgtggttcggagatcgtgcgtgag
gagggggcagcggcgtggcgttgttcgggcgaactgtcctgcccggcgcagcgcaaggaa
gccatcgcccatttcgcctcgcgtcgcgcgatggacatcgatggcctgggtgacaagtac
atcgaaaccctggtcgacgccggcatcgtcaagagcgtggccgacctgtaccgcctcagc
cgtgaccagctgctgcacctgaaactggtactggacgccgaggatccgtcagcactggcc
gctgcgctgaagctgcatctgcccgccgagggcagtggtgtggtgctcaatgcagtgctg
aagctggacggcaacgatccgggctggcgtgcgcgggcgctggtgcagccggccagcttc
gaatggaacacgaagaagatcgccaccaagtgggccgacaacctgatcgcggcgatcgac
gccagtcgtgatgccacgctggagcgcctgctgttcgcgctcggcatcgagcatgtgggc
gaaagcacggccaaggcgctggcgcagtggttcggtgacctggagctgatccgccatctg
ccgtggccgttgttcaagcgtgtgccggacatcggtggcgaagtggcgcgctcgctcggc
catttcttcgagcagcagggcaaccagcaggccatcgatgacctgttgcaggttggccag
gtgcgcatcagcgatgtgcacgcgcccagtgccaagctgcgcgagggcctggatctggcg
cagctgttggtcgagtcggagatccccggcattacccgcctgcgcgcggaaaagctggtg
gctgcgctgcctggcgcgcaggcggtgctcgacgccgagcatggccagttcgtcaacgcc
ggcctaccggacgacactgcgcgcggtctagcggagtggctggacgccgaaggccatggc
gcgatgctgttggccgccgagaaggcgatgcagcagatcctggccaaggcgccggcgctg
gccgagatcgttgcgggcccgctggacgggcagaccgtggtgctcaccggcaccctggcg
cagctcacccgcgatgccgccaaggagcgcctggaggcgctgggcgccaaggtctccggc
agcgtctcgaagaagaccagctttgtggtggccggtaccgaggcaggctccaagctggac
aaggcacagtcgctgggcgtgccggtgtgggacgaagaccgcctgctggcctatcttgcc
gaacacgaatga
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