Streptomyces griseofuscus: HEP81_02548
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Entry
HEP81_02548 CDS
T07010
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgf
Streptomyces griseofuscus
Pathway
sgf03030
DNA replication
sgf03410
Base excision repair
sgf03420
Nucleotide excision repair
sgf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HEP81_02548 (ligA)
03410 Base excision repair
HEP81_02548 (ligA)
03420 Nucleotide excision repair
HEP81_02548 (ligA)
03430 Mismatch repair
HEP81_02548 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgf03032
]
HEP81_02548 (ligA)
03400 DNA repair and recombination proteins [BR:
sgf03400
]
HEP81_02548 (ligA)
Enzymes [BR:
sgf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HEP81_02548 (ligA)
DNA replication proteins [BR:
sgf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HEP81_02548 (ligA)
DNA repair and recombination proteins [BR:
sgf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HEP81_02548 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HEP81_02548 (ligA)
MMR (mismatch excision repair)
DNA ligase
HEP81_02548 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HEP81_02548 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH_5
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
QNT92865
UniProt:
A0A7H1PXT5
LinkDB
All DBs
Position
complement(2901550..2903748)
Genome browser
AA seq
732 aa
AA seq
DB search
MAGDKQAETTAVPAEARDRHAQLAEQIEEHRFRYYVKDAPVVSDAEFDQLLKSLEALEEQ
YPELRTPDSPTQKVAGSYATEFTAVEHRQRMLSLDNTFNDEELAAWADRIARELGDQTYH
FLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIADIPDRLGGDEVPDLVE
IRGEVYFPMEKFLELNERLVAAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVHGIGA
LEGFSGMTRLSQAYDLLKTWGLPTSSHNRVVDDLDGVRRFIAHYDGENRHTVEHEIDGAV
IKLDEIRLQGRLGSTARAPRWAIAYKYAPEEVNTKLIDIKVGVGRTGRVTPYAQVEPVTV
AGSEVEFATLHNQEVVKAKGVLIGDTVVIRKAGDVIPEILGPVVDLRDGSEREFVMPGEC
PECGTPLRPMKEGDIDLRCPNGRTCPAQLRERVSYLAGRECLDIEHFGGVAAAALTRPLE
PADPPLVDEGDLFDLTVEKLLPIRAYVLDPDSGLPKRDPKTGEEKVVTVFANQKGEPKKN
TLALLENIEAAKSRPLARFLNGLSIRHVGPVAAQALAREFRSVDRIEQATEEELAATDGV
GPIIAAAVKEWFTEEWHREIVRKWKAAGVPLEDQVSGEAEGPRPLEGLTVVVTGTLENFT
RDGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAMQLKVPVLDEDGFGVLLEQGP
DAATEAALPTEE
NT seq
2199 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaagcaggcggagaccacggcggtgcccgccgaggcccgcgacaggcac
gcgcagctggcggagcagatcgaggagcaccgcttccggtactacgtgaaggacgctccc
gtcgtcagcgacgcggagttcgaccagctcctgaagtccctggaggcgctggaggagcag
taccccgaactgcgcacccccgactcacccacccagaaggtggcggggtcgtacgcgacg
gagttcaccgcggtcgagcaccgccagcgcatgctctccctcgacaacaccttcaacgac
gaggaactggccgcctgggccgaccgcatcgcccgcgaactcggcgaccagacctaccac
ttcctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacgtacgaacacggccgc
ctcacccgcgccgcgacccgcggcgacggccgcaccggcgaggacatcacgcccaacgtc
cgtacgatcgcggacatccccgaccggctgggcggcgacgaggtccccgacctggtcgag
atccgcggcgaggtctacttcccgatggagaagttcctcgaactgaacgagcggctggtc
gcggccggcgacaagcccttcgccaacccccgtaacgcggcggccggttcgctgcgccag
aaggacccccgggtcaccgccacccgcccgctgcacatggtggtgcacggcatcggcgcg
ctggagggcttcagcggcatgacccggctgtcccaggcgtacgacctcctcaagacctgg
ggcctgcccacctcctcgcacaaccgggtggtcgacgacctcgacggcgtccgccggttc
atcgcgcactacgacggcgagaaccgccacaccgtggagcacgagatcgacggcgccgtc
atcaagctggacgagatccgcctccagggccgcctcggctccaccgcgcgcgccccccgc
tgggccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcatcgacatcaag
gtgggcgtcgggcgcaccggccgggtcacgccgtacgcccaggtcgagccggtcaccgtc
gcgggcagcgaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggc
gtgctgatcggcgacaccgtcgtgatccgcaaggccggcgatgtcatcccggagatcctc
ggcccggtggtcgacctgcgcgacggcagcgagcgggagttcgtgatgcccggcgagtgc
cccgagtgcggcaccccgctgcggcccatgaaggagggcgacatcgacctccgctgcccc
aacggacgtacgtgcccggcccagttgcgcgagcgcgtctcctatctcgcgggccgcgag
tgcctggacatcgagcacttcggcggggtggccgcggccgccctgacccgcccgctggag
ccggccgaccccccactggtggacgagggcgacctgttcgacctgacggtggagaagctg
ctccccatcagggcgtacgtcctggacccggacagcgggctgcccaagcgcgaccccaag
accggtgaggagaaggtcgtcacggtcttcgccaaccagaagggcgagccgaagaagaac
accctggcgctgctggagaacatcgaggcggccaagtcccgtccgctggcccgttttctg
aacggactgtccatccggcatgtcggcccggtcgccgcccaggccctcgcccgcgagttc
cgctcggtcgaccgcatcgaacaggccacggaggaggagctggcggccacggacggcgtc
ggccccatcatcgcggccgcggtcaaggagtggttcaccgaggagtggcaccgcgagatc
gtccgcaagtggaaggccgcgggtgtcccgttggaggaccaggtcagcggggaggcggag
ggtccgcgtccgctggagggactcaccgtggtggtcaccggcacgctggagaacttcacc
cgggacggcgccaaggaggcacttcagagccggggcgccaaagtgaccggttcggtttcg
aagaagacctctttcgtggtcgttggtgacaatccgggatcgaaatacgacaaggccatg
caattgaaggttccggtgctcgatgaggacggattcggcgtcctgttggagcagggcccg
gacgccgcgacggaggccgcgcttccgaccgaggagtag
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