Sinocyclocheilus grahami (golden-line barbel): 107549089
Help
Entry
107549089 CDS
T04918
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04115
p53 signaling pathway
sgh04145
Phagosome
sgh04148
Efferocytosis
sgh04350
TGF-beta signaling pathway
sgh04510
Focal adhesion
sgh04512
ECM-receptor interaction
sgh04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
107549089
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
107549089
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
107549089
04148 Efferocytosis
107549089
09143 Cell growth and death
04115 p53 signaling pathway
107549089
09144 Cellular community - eukaryotes
04510 Focal adhesion
107549089
09142 Cell motility
04820 Cytoskeleton in muscle cells
107549089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sgh04131
]
107549089
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
sgh00536
]
107549089
Membrane trafficking [BR:
sgh04131
]
Endocytosis
Phagocytosis
Opsonins
107549089
Glycosaminoglycan binding proteins [BR:
sgh00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
107549089
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
TSP1_ADAMTS
Laminin_G_3
cEGF
TSP1_CCN
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
107549089
NCBI-ProteinID:
XP_016085513
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MKSTAIFLLLMLWSCESARVAESRDDNSVYDLFELVQVPRKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKHTRGSLLTVEKKDGSGPIFEIIS
NGKANTLDIVFSTESKQQVVSIEEADLAVGHWKNITLLVQEDRVQFYVGCEEVNTAELDA
SIQTILTQETPGVASLRIGKGAVKDRFMGVLQNMRFVFGTTLEAILRNKGCQNSIMTDII
TLDNPINGSRPAIRTDYTGHKTKDLQMICGFSCEDLAAMFKELKGLGVVVQELSNELRKV
TDEKNMLMNRMDIHAGVCLHNAIVHKNKEEWTVDDCTECTCQNSATVCRKISCPLIPCAN
ATVPDGECCPRCGTPSDSAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQ
TRDCYLQECDKRFKQDGSWSHWSPWSSCSVTCGAGVITRIRLCNSPTPQMEGKDCQGEGR
QTERCEKSPCPISGGWGPWSPWDTCSATCGGGVQNRKRLCNNPVPMYDGKDCVGDAEAGQ
ICNKQACPIDGCLSNPCFEGAQCTSFPNGSWKCGKCPTGYTGNGINCKDINECKEVPDAC
FEFNGVHRCENTVPGYNCLPCPSRYSGPQPFGRGVEDAASKKQVCTPRNPCLDGSHDCNK
NARCNYLGHFSDPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCP
NLPNSGQEDYDKDGVGDACDNDDDDDGIPDDRDNCPLIFNPRQYDYDRDDVGDRCDNCVY
NSNPDQTDTDNNGEGDACAVDIDGDGILNENDNCPYLYNIDQKDTDLDGVGDQCDNCPLE
HNPDQVDSDSDRVGDKCDSNQDIDEDGHQNNLDNCPYIPNANQADHDKDGKGDACDYDDD
NDGIPDDKDNCRLVPNKDQLDSDGDGRGDACKDDFDQDNVLDIYDVCPENFDISETDFRK
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFNSVDFSGTFFINTERD
DDYAGFVFGYQSSSRFYVVMWKQITQTYWSSTPTKAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTPGQVRTLWHDPKNVGWKDFTAYRWHLTHRPRTGHIRVVMYEGKKIMADSGRIY
DKTYAGGRLGLFVFSQEMVYFSDLKYECRDA
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgaagtcaactgcaatctttttgctactgatgctttggagctgcgagagcgcgagagtc
gcagaaagtcgagacgacaacagtgtttacgatctgtttgagctcgtccaagtgccgagg
aaaaaccacggggtgactctggtgaaaggcgacgatccgtacagccccgcctacaagatc
ctgaaccccgacctgattcccccggttcccgagagcgccttcagggacctgatcgattcc
atccatgcggagagaggatttctgcttctgctcaacttcaaacagttcaagcacacgaga
ggaagccttctgaccgtggagaagaaagatggctccggacccatcttcgaaataatttcc
aatgggaaagccaatactttggacattgttttttccactgaaagcaagcaacaggtcgtg
tccatcgaggaagcagatttggctgtgggacattggaaaaacatcacgcttttagtgcag
gaggacagggttcagttctatgtgggatgtgaggaggtgaatacagcagagctcgatgct
tctatccagactatcctcactcaggagaccccaggtgtggcgagcctgaggatcggcaag
ggcgcagtgaaggacaggttcatgggggtgttgcaaaacatgcgctttgtgtttggtacc
acactggaggcaattctgaggaataaaggatgccaaaactcaattatgactgatatcatc
acccttgacaatcccataaatggatccagacctgcaatcaggactgattacactggccac
aaaacaaaagatctgcagatgatttgtggcttttcatgtgaggacctggctgccatgttc
aaggaactgaaaggtcttggtgtggtggtgcaagagctgtccaatgaactccgcaaagtg
acagacgagaaaaacatgctcatgaatcgcatggacattcatgctggtgtctgtcttcac
aatgcaattgtgcacaaaaacaaggaggaatggacagtggacgattgcacagagtgcact
tgccagaactctgcaacggtgtgccgcaagatttcatgccccctaatcccatgtgcaaac
gccacagtgcctgatggggagtgctgccctcgatgtggaaccccgagcgattccgctgag
gatggctggtccccctggtctgaatggacccattgttctgtgtcctgtggaaggggcatt
cagcagcgcggccgctcctgcgaccgcatcaataacaactgcgagggcacgtcggtgcag
acgagagactgctaccttcaggagtgtgacaagcgctttaagcaggatggcagctggagt
cactggtcaccctggtcttcctgctcagtcacctgtggtgctggcgttatcacgcgcatc
cgtctctgcaactccccaacacctcaaatggaaggcaaagattgccagggtgaaggtcgg
caaactgaaaggtgtgagaaatcaccatgtccgatcagtggtggctggggaccatggtca
ccctgggatacttgctctgccacctgtggtggtggagtccaaaaccgtaaacgtctttgc
aataatccagtacccatgtatgacggcaaagactgtgtgggagacgcagaggccggccag
atttgcaacaaacaagcctgtccaattgatggatgcctttcaaatccttgctttgaagga
gcccagtgtacaagcttcccaaatggctcttggaaatgtggaaaatgccccacaggatac
actggcaatggaatcaactgcaaggatatcaatgagtgcaaggaggtccctgatgcctgc
tttgaatttaatggagtccacaggtgtgagaacacagtgccaggctacaactgcctgcct
tgcccctcacgctactccggcccacagccgtttggtcgaggagtggaggacgctgcttcc
aagaaacaggtctgcacacctcgtaatccctgcctcgatggaagccacgactgcaataag
aacgctcgctgcaactacctgggccatttctcagaccctatgtaccgctgtgagtgcaaa
cctggctatgctggaaatggacacatctgtggagaagacactgatcttgatggctggcct
aatgctgatcttgtgtgtgtcgagaatgcaacctatcactgcaagaaggacaactgcccc
aatcttcctaactctgggcaagaggactatgacaaggatggagttggtgatgcttgtgat
aatgatgatgacgatgatggaattcctgatgacagggacaactgcccactcatcttcaac
ccaagacagtacgactacgaccgcgatgacgtgggagaccgctgcgacaactgtgtgtac
aacagcaacccagaccagaccgacactgacaacaatggtgaaggtgacgcctgtgctgtg
gacattgatggagatggtattttgaatgagaatgacaactgcccatatctgtacaacatt
gaccagaaagacaccgatctcgatggagttggtgaccagtgtgacaactgccctctggaa
cacaacccagaccaggtcgactccgattctgaccgtgttggagacaaatgtgacagcaac
caggatatcgatgaggatggtcaccaaaacaacctggacaactgcccgtacatccccaat
gctaaccaggctgatcacgacaaggatggtaaaggagacgcttgcgactacgatgatgat
aatgacggcatccctgatgacaaagacaactgcagattggttcccaataaagatcaactg
gattctgatggcgatggacgtggtgacgcctgtaaagatgactttgaccaagacaatgtc
ctggatatctatgatgtctgtcctgagaactttgacatcagtgaaacagacttccgcaaa
ttccagatggttcctctggatcccaagggcacttctcagatcgaccccaactgggtggtt
cgtcaccaaggaaaagaactggttcagacagtcaactgcgaccctggcattgctgttggt
tttgatgagttcaattcagtcgacttcagtggaacgttcttcatcaacactgagagggat
gatgactacgccggcttcgtttttggataccagtccagctctcgcttctacgtggtcatg
tggaagcagatcacacagacctactggtccagcacacctaccaaggcacagggttactca
gggctgtcaatcaaagtggttaactccaccacagggccaggtgagcatctgagaaacgcc
ctgtggcacactggagacactccaggacaggtgcgcacactgtggcatgacccaaagaat
gtgggatggaaggacttcactgcttacagatggcatttgactcatagaccaagaactgga
cacataagagtggtcatgtatgaaggcaaaaagatcatggcagattctggaagaatttat
gacaaaacttatgcaggcggaagactaggtctctttgttttctcacaagagatggtgtac
ttctcagacctcaaatatgaatgcagagatgcgtaa
DBGET
integrated database retrieval system
