Sinocyclocheilus grahami (golden-line barbel): 107554421
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Entry
107554421 CDS
T04918
Symbol
kdm2b
Name
(RefSeq) lysine-specific demethylase 2B
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107554421 (kdm2b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
sgh03000
]
107554421 (kdm2b)
04121 Ubiquitin system [BR:
sgh04121
]
107554421 (kdm2b)
03036 Chromosome and associated proteins [BR:
sgh03036
]
107554421 (kdm2b)
Enzymes [BR:
sgh01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
107554421 (kdm2b)
Transcription factors [BR:
sgh03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
107554421 (kdm2b)
Ubiquitin system [BR:
sgh04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
107554421 (kdm2b)
Chromosome and associated proteins [BR:
sgh03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
107554421 (kdm2b)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
107554421 (kdm2b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
F-box
PHD
AppA_SCHIC
LRR_At1g61320_AtMIF1
Rubredoxin
Motif
Other DBs
NCBI-GeneID:
107554421
NCBI-ProteinID:
XP_016092399
LinkDB
All DBs
Position
Unknown
AA seq
837 aa
AA seq
DB search
MAASTATTPAATTSSSTATAVKLPSSRTSSGARRRRTRCRKCEACVRTECGECHFCKDMK
KFGGPGRMKQSCIMRQCIAPVLPHTAVCVVCGEAGKEDTLDEDEKFNAMLMECSICNEII
HPNCLKMKDTAGVVNDELPNCWECPKCNYAGKTGKQKRGPGFKYASNLPGSLLREQKAGR
DGREEGDQTSTGASSIKRKIEREETPRLKAEDLPSRLPPLLSPSGLPRPRSEVPNFLRKK
RKLFDDDEEEEEASAKKKPKKPWRPEEALIPKLSYMKTEEEEDNSDEEEERQEKRELPRR
SFKKDYSTVRKEEDHEEERREARDPPFRSLKDFNTLRKEEDLEEEKEEDDEEEEEDNNGK
RGRDSSPALKNISLSLESDASRCSSPRAGPSSEGSETQEKAPRARAKRHRRKPPNHQLSA
ELSKQLNMEIRRTEHSLANENQQPLKSEPEDSENEEPKRGLRNGTAGNGGGGGGVERGAG
GEGGGERPHLRAREMNGTSWELRHFYPPQITPLGLNRSSPTVRPIPARSPPKCVQMERHV
IRPPPICPPPDRLPLADGRNHIAPREAWLAIFSHLSHRELCVSMRVCRTWNRWCCDKRLW
TRIDLKRCKSITPLMLSGIIRRQPITLDLSWTNISKKQLSWLINRLPGLRVLLLSGCSWV
AVSALCTSSCPLLRTLDLQWVEGLKDPQMRDLLSPPTDNRPGQMDTRSKLRNVTDLRLAG
LDITDSSLRLIIKNMPLLSHLNLSYCNHINDQSVNLLTAAGTTTRDSLTDVNLSVCNRVT
DQSLSYFKRCGSICHIDLRFCKQVSRQACERFIAEMSVIVPFQLQEDKLLQKLHSTP
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatcaacagcaacaactcctgcagcgaccacttcttcatccactgcaacagcg
gtcaagctgccatccagtcgaacttcctctggagctcgccgtagacgcacacgatgtcga
aaatgcgaggcatgtgtgcggacggaatgtggagagtgtcacttctgtaaggacatgaag
aagtttggaggacctggtcgaatgaaacagtcttgcattatgagacaatgtatagcgccc
gtgttaccacatacagcagtatgtgtggtttgcggtgaagccggtaaagaagacacactt
gatgaagatgaaaaatttaatgccatgctcatggagtgctccatctgcaatgaaattatc
cacccaaactgcctcaagatgaaggacacagctggagtagtaaatgacgagcttcctaac
tgctgggaatgtccaaaatgcaattacgctgggaaaactggaaaacaaaaacggggccca
ggctttaagtacgcatccaacctgccaggctccctgctgagggagcagaaagcaggacgt
gacggaagagaggaaggggaccagacatccacaggtgcttcatccatcaaaaggaagatt
gagagggaggaaactcccagactaaaggctgaagatctaccttcccgtcttcccccactc
ttgagccccagtggcctgccaagaccacgatctgaagtgcccaacttcttgaggaagaag
aggaagttatttgatgatgatgaagaggaagaggaggctagtgctaaaaaaaagccgaag
aaaccctggaggcctgaagaggctttgattcccaaactctcttacatgaaaacagaagag
gaggaagacaactctgatgaggaggaagagaggcaggagaagcgagaactgcctcgtcgt
tcatttaagaaagactacagcacagtgagaaaagaggaagatcatgaggaagagaggagg
gaggcgagagatccacctttcaggtccctaaaggatttcaacactctacggaaagaggaa
gacctagaagaagaaaaggaggaagatgatgaggaagaggaggaggacaataatggcaaa
cgaggcagggatagtagccctgcactgaagaacatctccttatcacttgagagtgacgca
tcacggtgcagctccccaagagcagggccgagcagtgaaggtagtgagacgcaagagaag
gctccacgtgctcgggcgaagcgacaccggcgcaagccccctaaccaccagctcagcgca
gaactcagcaagcagctcaacatggagatccgtcgcacagagcattcactggccaatgag
aaccagcagccactcaagagtgaacccgaggacagcgagaacgaggaaccaaagagaggc
ttacggaacgggactgcaggaaatggaggaggaggtggaggagtagaaagaggagcaggt
ggagagggaggaggggagcgaccgcacttacgagcaagagagatgaatgggacatcttgg
gagctgcggcacttctacccacctcagattaccccgcttggtttgaaccgcagttcgcct
acagtcagaccaattcctgcacgttcccctcccaagtgtgttcaaatggagcgccatgtg
atccggccacctccaatctgccctccacctgacaggttaccactagctgatggccgtaat
cacatcgctcccagagaagcatggttggctattttcagtcatttgagccatcgtgaactt
tgtgtgtctatgcgagtgtgccgaacatggaatcgctggtgctgtgacaagagattatgg
actcgtatcgatttgaagcgttgtaaatccatcaccccactgatgctaagtgggataatt
cgcagacagcccatcactctggacttgagctggaccaacatctccaaaaagcaattaagc
tggcttattaaccgattaccaggactgagggtacttcttctatcaggctgttcatgggtg
gctgtttcagctctctgcacgtccagctgtcctctgttacgtactctagacctgcagtgg
gtggagggacttaaagacccccagatgagggacctgctgtcccctcctactgacaataga
ccaggtcagatggacacgcgcagcaaattacggaatgttactgacctgcgtctggctggt
ttggacattacagacagctctctgcgtctaatcattaaaaatatgcctctactctcccat
ctgaacttgagttactgcaaccatatcaatgaccagtcagtaaacctgctgactgctgca
gggaccaccactagagactccttaaccgatgtcaacctttctgtgtgtaacagggtcact
gatcagtcgctgagctacttcaaacgctgtggaagcatctgccacattgacctgcgattt
tgcaagcaggtgagccgacaggcatgtgagcgcttcattgctgagatgtcagtcatcgtt
cctttccaactgcaagaggataaactgctccaaaaacttcacagcaccccctag
DBGET
integrated database retrieval system
