Sinocyclocheilus grahami (golden-line barbel): 107596425
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Entry
107596425 CDS
T04918
Symbol
traf6
Name
(RefSeq) TNF receptor-associated factor 6 isoform X1
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
sgh
Sinocyclocheilus grahami (golden-line barbel)
Pathway
sgh04010
MAPK signaling pathway
sgh04120
Ubiquitin mediated proteolysis
sgh04140
Autophagy - animal
sgh04144
Endocytosis
sgh04620
Toll-like receptor signaling pathway
sgh04621
NOD-like receptor signaling pathway
sgh04622
RIG-I-like receptor signaling pathway
sgh05132
Salmonella infection
sgh05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
sgh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107596425 (traf6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
107596425 (traf6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107596425 (traf6)
04140 Autophagy - animal
107596425 (traf6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
107596425 (traf6)
04621 NOD-like receptor signaling pathway
107596425 (traf6)
04622 RIG-I-like receptor signaling pathway
107596425 (traf6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
107596425 (traf6)
09171 Infectious disease: bacterial
05132 Salmonella infection
107596425 (traf6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
sgh04131
]
107596425 (traf6)
04121 Ubiquitin system [BR:
sgh04121
]
107596425 (traf6)
Enzymes [BR:
sgh01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107596425 (traf6)
Membrane trafficking [BR:
sgh04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
107596425 (traf6)
Ubiquitin system [BR:
sgh04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
107596425 (traf6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
zf-C3HC4
zf-C3HC4_2
zf-RING_2
zf-C3HC4_3
zf-RING_UBOX
zf-C3HC4_4
zf-RING_5
TRAF3_RING
DM
zf-TRAF_2
TRAF6_Z2
Sina_ZnF
RING_XB3-XBAT31
U-box
DUF4472
FrsA-like
ATG16
Motif
Other DBs
NCBI-GeneID:
107596425
NCBI-ProteinID:
XP_016142647
LinkDB
All DBs
Position
Unknown
AA seq
547 aa
AA seq
DB search
MIWGMACSDTEKLSLDVEPYCDGERSGCAAAMEKERESYLSPTENPSTISVSASIPPDQQ
GYDVEFDPPLENKYECPICLMGLRSAVQTPCGHRFCNSCIKKSIRDTGQKCPVDNEVLLE
EQLFPDNFAKREILSLTVRCPNVGCSDKMELRQLEKHSSQCKFATVQCPQCLESVRKSHL
DKHKSEQCLQRRMTCPACAGSFVYASKQIHEQICPFANTVCGYCEMELIRDQLALHCDTD
CLKAPVACTFSTFGCHVKMPRNELAQHMQEFTQMHMRCMAEFLRSQTLNSCSVPSFATHS
SSDERGASTRAPDSCQCRPELMNLRETVLELEGRLVRQDQQIRELCIHNETQKNQVTELR
RKLSSLEEATRELEAQQYQGVYVWRLENFSLHLRNQEAGQPIVLHSPPFYTGRPGYKLCL
RLHLQTPSAPRCSNYISLFVHTMQGEFDSQLSWPLQGMIQLAVLDQVEGQHHVEVMETKP
DLQAFQRPTVLRNPKGFGYVTFLHLQALRQRGFVKDDVLLVRCEVTPRFDASLRREGVQP
RGSEPSL
NT seq
1644 nt
NT seq
+upstream
nt +downstream
nt
atgatttgggggatggcttgcagtgacacggagaagctcagccttgatgtggagccctac
tgtgatggcgagcgctccggttgtgcggcagccatggagaaagaaagggagtcctatctg
agcccgacagagaacccctccaccatcagtgtctctgctagtatccctccagaccagcaa
ggctatgacgtggagtttgaccctccgctagagaacaagtatgagtgccctatctgtctg
atgggtcttcgctcggcagtacagacaccatgtggacatcgattctgcaactcctgcatc
aagaagtccatcagggacacagggcagaaatgtccagttgacaatgaggtgctgcttgag
gaacagctcttccctgataactttgccaaacgagagattctctcacttactgtccgatgt
cctaatgtaggatgcagtgataaaatggaattgcgccaactggagaaacactcgtctcag
tgtaagtttgccacagtgcagtgccctcagtgtctggaatctgttcgtaagagccatctg
gataaacacaagagcgagcagtgtttacagcggcgtatgacctgccctgcctgtgcaggg
agctttgtgtatgctagcaaacagattcatgaacagatttgtcctttcgccaatacagtg
tgtggatattgcgaaatggagcttatacgggatcagttggcattgcactgtgacacagac
tgtctgaaagctcctgtggcctgtactttcagcacttttggttgtcatgtaaagatgcca
agaaatgaactggcccaacacatgcaggaatttacacagatgcacatgcgttgcatggct
gagtttctgcgtagccagactctcaatagctgctcagtgccctcatttgccacacactct
tcgtcagatgaacgtggggcctctacccgagccccagattcttgccagtgtagaccggag
ctgatgaacctgcgtgagacggtcttggagctggagggccggctggttcgtcaagatcaa
cagatccgcgagctgtgcatccacaatgagacacagaaaaaccaggtcacagagctacgc
cgaaagctgagctcactggaggaggccacccgagagctggaagcccagcagtatcaaggc
gtctatgtatggcgcttggagaacttctcacttcacctgcgcaaccaagaagccggtcag
cccatagtcctccacagcccacctttctacacgggccggccggggtacaaactctgccta
cgactgcatctgcaaactcccagcgccccacgctgttccaactacatctcacttttcgtg
cacactatgcagggtgagtttgacagccagctctcctggcccttgcagggcatgatccaa
ctggcagtgttggaccaggtcgaggggcagcatcacgtggaagtgatggagaccaagcca
gacctgcaggccttccagaggcccactgtcctgcgcaaccccaagggttttggctacgtc
actttcttgcacctacaggctttgcggcagcgtgggtttgtgaaagacgacgtgctgttg
gtgcgctgcgaggtcacaccacgattcgacgctagcctcaggagggaaggggtccaacct
cgggggtcagaaccttcactttga
DBGET
integrated database retrieval system
