Streptomyces genisteinicus: IAG43_22640
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Entry
IAG43_22640 CDS
T07903
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgj
Streptomyces genisteinicus
Pathway
sgj03030
DNA replication
sgj03410
Base excision repair
sgj03420
Nucleotide excision repair
sgj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IAG43_22640 (ligA)
03410 Base excision repair
IAG43_22640 (ligA)
03420 Nucleotide excision repair
IAG43_22640 (ligA)
03430 Mismatch repair
IAG43_22640 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgj03032
]
IAG43_22640 (ligA)
03400 DNA repair and recombination proteins [BR:
sgj03400
]
IAG43_22640 (ligA)
Enzymes [BR:
sgj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
IAG43_22640 (ligA)
DNA replication proteins [BR:
sgj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
IAG43_22640 (ligA)
DNA repair and recombination proteins [BR:
sgj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
IAG43_22640 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
IAG43_22640 (ligA)
MMR (mismatch excision repair)
DNA ligase
IAG43_22640 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
IAG43_22640 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
ILEI
Zn_ribbon_TFIIB
Zn_ribbon_CLPX_N
Motif
Other DBs
NCBI-ProteinID:
QNP65449
UniProt:
A0A7H0HY33
LinkDB
All DBs
Position
5187491..5189674
Genome browser
AA seq
727 aa
AA seq
DB search
MAGEEQTALPAEVRERHAELAEQIDEHRFRYYVRDAPVVSDAEFDRLLRSLEAIEEEYPA
LRTPDSPTQKVAGNYETELTKVEHRERMLSLDNAFDDAELAAWAERVAREVGAPGHHFLC
ELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPNRLKGERIPALVEIRG
EVYFPMDQFQALNERRVAAGEQPYANPRNSASGSLRQKDPRVTATLPLHMVVHGIGAREG
LDIDRLSEAYDLLRDWGLPTARHNRVVGSLEEVREFIAHFGENRHSVEHEIDGVVVKLDE
IRLQGRLGSTARAPRWAIAWKYAPEEVNTTLVNIRVGVGRTGRVTPYAQVEPVTVAGSEV
EFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECPECGT
PLRPMKEGDIDLRCPNARSCPAQLRERVSYLAGRESLDIDYFGEVVAAALTRPLEPAAPP
LADEGDLFGLTMEQLLPIKAYVVDKDSGLPKRDPKTGEDKTAMVFATKQGTPKANAVKLL
AGIEEAKRRPLARIINGLSIRHVGPVAAQALAREFRSIERIEQASEEELAATDGVGSIIA
ASLKQWFAEDWHQEILRKWRLAGVRMEEDAAEGDEGPRPLEGLTVVVTGTLENHTRDGAK
EALQALGAKVAGSVSKKTSFVVVGDNPGSKYDKAVQLKVPVLDEPGFVVLLEQGPEAARE
AAVTEES
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
gtggctggcgaagagcagacggcactgcccgccgaggtacgggagcggcacgcggagctc
gccgagcagatcgacgagcaccgcttccggtactacgtgagggacgccccggtcgtcagc
gacgcggagttcgaccggctcctgcggtcgctggaggcgatcgaggaggagtacccggcg
ctgcgcacccccgactcgccgacccagaaggtcgccgggaactacgagaccgagctgacc
aaggtcgagcaccgcgagcggatgctctccctggacaacgccttcgacgacgcggagctc
gccgcctgggcggagcgcgtcgcccgcgaggtgggcgcccccggccaccacttcctgtgc
gagctcaaggtggacggcctcgcggtcaacctcacctacgagcacggccggctcacccgc
gccgcgacccgcggcgacggccggaccggcgaggacatcaccccgaacgtgcgcaccatc
gccgagatccccaaccgcctgaagggcgagcggattccggccctcgtcgagatccgcggc
gaggtctacttcccgatggaccagttccaggcgctgaacgagcgccgggtcgcggccggc
gagcagccgtacgccaacccgcgcaacagcgcctccggttcgctgcggcagaaggacccc
cgggtcaccgccaccctcccgctgcacatggtggtccacggcatcggcgcccgtgagggc
ctcgacatcgaccggctctcggaggcgtacgacctgctgcgcgactggggcctgcccacc
gcccggcacaacagggtcgtcggctcgctggaggaggtccgggagttcatcgcccacttc
ggcgagaaccgccactccgtggagcacgagatcgacggcgtcgtcgtcaagctcgacgag
atccgcctccagggccgcctcggctcgacggcgcgcgccccccgctgggcgatcgcctgg
aagtacgcgccggaggaggtcaacaccacgctcgtcaacatccgggtcggtgtgggccgt
accggccgggtgacgccctacgcgcaggtggagccggtcacggtcgccggctccgaggtc
gagttcgcgaccctgcacaaccaggaggtcgtcaaggccaagggcgtgctcatcggcgac
acggtggtgctgcgcaaggccggcgacgtgatcccggagatcctcgggccggtggtggac
ctccgggacggcagcgagcgggagttcgtgatgcccgccgagtgccccgagtgcgggacg
ccgctgcggcccatgaaggagggcgacatcgacctccgctgcccgaacgcccgttcctgc
cccgcccagttgcgcgagcgcgtctcctacctcgcgggccgcgagagcctggacatcgac
tacttcggcgaggtcgtcgccgcggccctcacccgccccctggaacccgccgctccgccg
ctggccgacgagggcgacctcttcggcctgacgatggagcagctgctgcccatcaaggcg
tacgtcgtcgacaaggactccggcctccccaagcgcgacccgaagacgggcgaggacaag
accgccatggtcttcgccaccaagcagggcaccccgaaggccaacgccgtcaagctgctc
gcgggcatcgaggaggccaagcggcggccgctcgcgcggatcatcaacggcctctccatc
cggcacgtgggcccggtcgccgcgcaggcgctcgcccgggagttccgctccatcgagcgg
atcgagcaggcgagcgaggaggagctggcggccaccgacggcgtgggatccatcatcgcc
gcctccctcaagcagtggttcgccgaggactggcaccaggagatcctgcgcaagtggcgc
ctggccggcgtgcggatggaggaggacgccgccgagggcgacgagggcccccgcccgctg
gaggggctgaccgtggtcgtcaccgggaccctcgagaaccacaccagagatggcgcaaaa
gaagccctccaggctctcggcgcgaaagtggccggttccgtttccaagaagacgtccttc
gtggtcgtcggtgacaaccccggttcgaagtacgacaaggccgtgcagctgaaggtgccc
gttctcgacgagccgggcttcgtcgtcctgttggaacagggaccggaggcggcccgtgag
gccgctgtgacggaagagagctga
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