Streptomyces goshikiensis: PET44_02235
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Entry
PET44_02235 CDS
T09307
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03030
DNA replication
sgk03410
Base excision repair
sgk03420
Nucleotide excision repair
sgk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PET44_02235 (ligA)
03410 Base excision repair
PET44_02235 (ligA)
03420 Nucleotide excision repair
PET44_02235 (ligA)
03430 Mismatch repair
PET44_02235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgk03032
]
PET44_02235 (ligA)
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_02235 (ligA)
Enzymes [BR:
sgk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PET44_02235 (ligA)
DNA replication proteins [BR:
sgk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PET44_02235 (ligA)
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PET44_02235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PET44_02235 (ligA)
MMR (mismatch excision repair)
DNA ligase
PET44_02235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PET44_02235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_5
HHH_2
BRCT
HHH
PTCB-BRCT
HHH_3
Motif
Other DBs
NCBI-ProteinID:
WBY18532
LinkDB
All DBs
Position
436372..438462
Genome browser
AA seq
696 aa
AA seq
DB search
MTTLTAAQALSSTSGTSGPAALTGRSEYEAALRRLREASQAYYGDGDSVMDDASYDRLRL
ALLAWETEHPAEVAPGSPTTLVADGAAPAGDVAHTTRLLSLDNVFDAEGLVAWGASVERR
LGRAPAGGFTVEPKIDGAAVAARYRGGRLVRIVTRGDGSQGEDISHVIGQIDGLPELLAG
EATVEVRGEVAFTQEQFEVANAVRVAHGAPVFANPRNATAGTLRAKDRPYRLRMTFWAYG
AVELEGVPFLPAGATQAEALAAVAAAGVRTTAAAGAGLHIVDDLAGAQQAVDAMAAMRAE
LPVGIDGVVIKLNDTAEQEAIGSGTRFPYWAIAVKLPAVERQTVLEDVVWEVGRTGVLAP
TAVLAPVEIDGSTVTRATLHNPADIRRRDLHIGDTVTVYKAGDIIPRVQAAVALLRPAGA
KPVPLPETCPRCGGEINTAQERWRCAKGTSCALPALIEYAAGREMLDIDGLGKTYVAALV
DSGDVTDVADLFTLTLEQLTAASGSSRRAAKLAEQIEAAKARPLSRVFCALGVLGTGRSM
SRRIARHFVTMEAIRRADAAEMQDVEGIGPEKAPVIVEQVAALAPVIDKLIAAGVTLHEP
EASTTASAGGPLDGKVVVVTGRMAGPLEGFGRTEMNALIEKAGGRAGSGVSARTSVLVCA
PSASGKPSSKAVKAAELGVEVLTPEAFAELVADYLP
NT seq
2091 nt
NT seq
+upstream
nt +downstream
nt
atgacgacacttaccgccgcccaggcgctgtccagcacgtccggcacgtccggccccgcc
gccctcaccggccgcagcgagtacgaggccgcgctccggcgcctgcgcgaggcctcgcag
gcgtactacggcgacggtgacagcgtcatggacgacgcctcgtacgaccggctccggctg
gccctcctggcctgggagacggagcaccccgccgaggtcgcgcccggctcccccaccacc
ctggtcgccgacggggcggcgccggccggcgatgtcgcgcacaccacccgtctgttgagc
ctggacaacgtcttcgacgccgagggcctggtggcctggggcgcctccgtcgagcgccgg
ctggggcgcgccccggccggcgggttcaccgtcgagcccaagatcgacggcgcggcggtg
gccgcccgctaccgtggcggccgcctcgtgcggatcgtcacccgcggcgacggcagccag
ggcgaggacatcagccacgtcataggccagatcgacggcctccccgagctgttggccggg
gaggccaccgtcgaggtgcgcggcgaggtggccttcacccaggagcagttcgaggtggcg
aacgcggtccgggtcgcccacggcgcaccggtcttcgccaacccccgcaacgccacggcg
ggcacgctgcgggcgaaggaccggccgtaccggctccggatgacgttctgggcctacggc
gcggtggagctggagggcgtaccgttcctgcccgccggggccacgcaggccgaggccctg
gccgccgtggccgcggccggggtgcggacgaccgcggccgccggcgccggactccacatc
gtcgacgacctcgccggggcgcagcaggcagtcgacgcgatggcggcgatgcgcgcggaa
ctacccgtcggcatcgacggcgtggtcatcaagctgaacgacacggccgagcaggaggcc
atcggctccggcacccggttcccgtactgggccatcgcggtcaagctgcccgcggtcgag
cggcagacggtcctggaggacgtggtgtgggaggtcggccgcaccggcgtcctggccccg
accgcggtgctcgccccggtcgagatcgacggctccaccgtcacccgggccacgctgcac
aaccccgccgacatccgccgccgcgacctccacatcggtgacacggtgacggtgtacaag
gccggtgacatcatcccgcgcgtccaggcggccgtggccctgctccgaccggccggggcg
aagccggtaccgctgcccgagacgtgcccccgctgtggtggcgagatcaacaccgcccag
gagcggtggcggtgcgcgaagggcacctcgtgcgcgctcccggcgctgatcgagtacgcc
gccgggcgcgagatgctcgacatagacggcctcgggaagacgtatgtggcggccctggtc
gattccggggacgtcaccgacgtcgccgacctcttcaccctcaccctggagcagctcacc
gcggcgtccggcagctccaggcgggccgccaagctcgccgagcagatcgaggcggccaag
gcccgcccgctgagccgcgtcttctgcgccctgggggtgctcggcaccgggcgcagcatg
tcccgtcgtatcgcgcggcacttcgtcacgatggaggcgatccgccgggccgacgcggcc
gagatgcaggacgtggagggcatcggcccggagaaggccccggtcatcgtcgagcaggtc
gccgccctggccccggtcatcgacaagctgatcgcggcgggcgtcaccctgcacgagccc
gaggcttccacgacggcgtccgccgggggcccgctggacggcaaggtcgtcgtggtcacc
ggcaggatggccgggcctctggagggcttcggccggaccgagatgaacgccctgatcgag
aaggcgggcgggcgcgcgggcagcggcgtcagtgcccggacgtccgtcctcgtctgcgcg
ccgtccgcgagcggcaagccgagctcgaaggcggtcaaggccgccgagctcggtgtcgag
gtcctcacgccggaggccttcgccgagctggtcgccgactacctgccctga
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