Streptomyces goshikiensis: PET44_22930
Help
Entry
PET44_22930 CDS
T09307
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgk
Streptomyces goshikiensis
Pathway
sgk03030
DNA replication
sgk03410
Base excision repair
sgk03420
Nucleotide excision repair
sgk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PET44_22930 (ligA)
03410 Base excision repair
PET44_22930 (ligA)
03420 Nucleotide excision repair
PET44_22930 (ligA)
03430 Mismatch repair
PET44_22930 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgk03032
]
PET44_22930 (ligA)
03400 DNA repair and recombination proteins [BR:
sgk03400
]
PET44_22930 (ligA)
Enzymes [BR:
sgk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PET44_22930 (ligA)
DNA replication proteins [BR:
sgk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PET44_22930 (ligA)
DNA repair and recombination proteins [BR:
sgk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PET44_22930 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PET44_22930 (ligA)
MMR (mismatch excision repair)
DNA ligase
PET44_22930 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PET44_22930 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
RNA_lig_T4_1
zf-TFIIB
Motif
Other DBs
NCBI-ProteinID:
WBY22227
LinkDB
All DBs
Position
5156802..5159012
Genome browser
AA seq
736 aa
AA seq
DB search
MAAEQKQAGDAAVPAAVREQHALLAEQVEEHRFRYYVNDQPVVSDAEFDQLLRSLEALEE
QYPQLRTPDSPTQKVAGAYETDFASVQHRERMLSLDNAFDDEELAAWAERVARDANTSDY
HYLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLTGDRIPALV
EIRGEVFFPMEKFEELNARLVETEGKPFANPRNAAAGSLRQKDPKITASRPLHMVVHGIG
AREGFDIDKLSHAYELLREWGLPTARHNRVVSSLAEVREFITHFGENRHSVEHEIDGVVV
KLDEIPLQGRLGSTARAPRWAIAWKYAPEEVNTKLVDIKVGVGRTGRVTPYAQVEPVTVA
GSEVEFATLHNQEVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSEREFVMPAECP
ECGTPLRPMKEGDIDLRCPNGQTCPAQLRERLFYLGGRQCLDIENFGAVAAAALTNPLEP
AEPPLRDEGDLFGLTIEDLLPIKAYVLDGDSGLPKRDPKTGEEKIVTVFANQKGEPKKNA
LAMLENIAAAKERPLARVINGLSIRHVGPVAAEALAREFRSIERIEQATEEELAATDGVG
AIIAASLKEWFAVDWHQEILRKWREAGVRMEEEGSGEEEGPRPLEGLTVVVTGTLESHTR
DGAKEALQSRGAKVTGSVSKKTSFVVVGDNPGSKYDKAVQLKLAILDDAGFAVLLEQGPD
AAREAALPVDGGAAAE
NT seq
2211 nt
NT seq
+upstream
nt +downstream
nt
atggcagccgaacagaagcaggccggcgacgcggcggtaccggcggcggtgcgcgaacag
cacgcgctgctcgccgaacaggtcgaggagcaccgcttccggtactacgtgaacgaccag
ccggtcgtcagcgacgccgagttcgaccagctgctgcgctccctggaggcgctggaggag
cagtacccgcagctgcgcacgcccgactcgcccacccagaaggtggccggggcgtacgag
acggacttcgcctccgtccagcaccgcgagcggatgctctccctcgacaacgccttcgac
gacgaggaactggcggcctgggccgagcgggtggcccgggacgccaacacctcggactac
cactacctgtgcgagctgaaggtcgacggcctcgccgtgaacctcacctacgagcacggc
cgcctcacccgggccgccacccgcggcgacggccgcaccggcgaggacatcacgcccaac
gtccgcaccatcgcggagatcccggaccgcctgacgggcgaccggatcccggccctcgtg
gagatccgcggcgaggtcttcttcccgatggagaagttcgaggagctcaacgcccgcctc
gtggagacggagggcaagcccttcgccaacccgcgcaacgcggcggccggttcgctgcgc
cagaaggacccgaagatcaccgcgagccgcccgctgcacatggtggtgcacggcatcggc
gcgcgcgagggcttcgacatcgacaagctgtcgcacgcgtacgagctgctgagggagtgg
ggcctgcccaccgcgagacacaacagagtcgtctcctcgctcgccgaggtccgcgagttc
atcacccacttcggcgagaaccggcactccgtggagcacgagatcgacggcgtcgtcgtc
aagctcgacgagatcccgctccagggccgcctcggctccaccgcgcgcgcaccgcgctgg
gccatcgcctggaagtacgcccccgaagaggtcaacaccaagctggtggacatcaaggtc
ggcgtcggccgcaccggccgcgtcaccccgtacgcccaggtcgagccggtgaccgtggcc
ggctcggaggtcgagttcgccaccctgcacaaccaggaggtcgtcaaggccaagggcgtg
ctcatcggcgacaccgtcgtcctgcgcaaggccggcgacgtgatccccgagatcctcggc
cccgtcgtggacctgcgggacggcagcgagcgcgagttcgtgatgccggccgagtgcccc
gagtgcgggacgccgctgcggccgatgaaggagggcgacatcgacctccgctgccccaac
gggcagacctgccccgcccagttgcgcgagcggctcttctacctcggcggtcggcagtgc
ctggacatcgagaacttcggcgcggtggccgcggccgccctcaccaacccgctggagccg
gccgaaccgccgctgcgcgacgagggcgacctcttcggcctcaccatcgaggacctgctg
cccatcaaggcgtacgtgctcgacggtgacagcgggctgcccaagcgggatccgaagacg
ggcgaggagaagatcgtcaccgtcttcgccaaccagaagggcgagccgaagaagaacgcc
ctggcgatgctggagaacatcgcggccgccaaggagcgccccctggcccgcgtcatcaac
ggcctgtcgatccgtcacgtcgggccggtcgcggccgaggccctcgcccgcgagttccgc
tccatcgagcgcatcgagcaggcgacggaggaggaactggccgccaccgacggggtcggc
gccatcatcgccgcctccctcaaggaatggttcgccgtcgactggcaccaggagatcctg
cgcaagtggcgggaagccggcgtccggatggaggaggaaggttccggcgaggaggagggc
ccgcgccccctggaaggcctgaccgtcgtcgtcaccggcaccctggagagccacacccgg
gacggcgccaaggaggccctgcagagccgcggcgccaaggtgaccggttccgtctccaag
aagacctcgttcgtcgtggtcggcgacaacccgggctccaagtacgacaaggccgtgcag
ctgaagctggccatcctcgacgacgcgggcttcgcggtgctgctggaacagggcccggac
gcggcccgcgaggccgccctcccggtggacggcggcgccgcggcggagtag
DBGET
integrated database retrieval system
