Sodalis glossinidius: SG1678
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Entry
SG1678 CDS
T00316
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgl
Sodalis glossinidius
Pathway
sgl03030
DNA replication
sgl03410
Base excision repair
sgl03420
Nucleotide excision repair
sgl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SG1678
03410 Base excision repair
SG1678
03420 Nucleotide excision repair
SG1678
03430 Mismatch repair
SG1678
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgl03032
]
SG1678
03400 DNA repair and recombination proteins [BR:
sgl03400
]
SG1678
Enzymes [BR:
sgl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SG1678
DNA replication proteins [BR:
sgl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SG1678
DNA repair and recombination proteins [BR:
sgl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SG1678
NER (nucleotide excision repair)
GGR (global genome repair) factors
SG1678
MMR (mismatch excision repair)
DNA ligase
SG1678
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SG1678
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
BAE74953
UniProt:
Q2NSC2
A0A193QL59
LinkDB
All DBs
Position
complement(2871309..2873345)
Genome browser
AA seq
678 aa
AA seq
DB search
MEQIEQHILRLRKQLRHWEYLYYVEAAPEVPDSEYDRFMAELRTLEAERPDLLTADSPSQ
RVGGQAQSSFGQVRHEVPMLSLDNVFEEPGFLAFDKRVRDRLKRDDDMTYCCELKLDGLA
VSLLYENGELVRAATRGDGATGEDITANVRTIRTIPLRLQDHDNLPRLLEIRGEVFMSEA
GFLRLNETAKREGSKVFANPRNAAAGSLRQLDPSITARRPLTFYCYGVGLLEDGELPESH
WERLQQFKAWGVPVSDRVRRCTGSAAVLDFYRQVHEARLSLGFDIDGVVIKVDSLALQQR
LGFVARAPRWAIAYKFPAQEQLTRVRDVEFQVGRTGAITPVARLEPVLVSGAMVSNATLH
NADEVERLGLMIGDTVIVRRAGDVIPQIVGVVTSERPAEVRPVAFPTQCPVCSSDVERVE
GEAVLRCTAGLVCAAQRKEALKHFVSRRAMDIDGMGDKIIDQLVERELVKTPADLFRLNK
EILTRLDRMGSKSAQNLLEALEKARQTTFARFLYALGIREVGEATAVNLAAAYGTLDALI
AADIDSLTGVQDIGNIVATHVRHFFEETHNIEVIQDLLSPAIGIRWPEPVAAPVAASDNP
FAGKTIVLTGSLSSLSRDEAKDHLVALGARVSGSVSAKTDLLIAGEAAGSKLSKAQQLNI
PVMDEAEMMRLLGESSDA
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
atggaacagattgaacaacatatcctgcggttacgtaagcaactgcgacactgggaatac
ctctattacgtggaagccgcccctgaagtgcccgacagtgaatatgaccggtttatggcg
gaactgcgcacgctggaggccgaacggccagatctgctgaccgccgattcccccagtcag
cgcgtcggcggacaagcgcagagcagttttggacaggtgcgccatgaagtgcccatgctg
tcgctggataatgtttttgaagagccgggttttttggcgttcgacaagcgggtgcgcgac
aggcttaagcgcgacgacgacatgacctattgctgcgagctgaagctggacggtctggcg
gtcagcctgctttatgagaacggcgagctggtgcgggccgccacccgcggcgacggcgcc
accggtgaggatatcaccgccaacgtgcgcacaatccgcaccattccgttgcgtttgcaa
gatcacgacaacttgccgaggctgctggagatccgcggcgaagtattcatgtctgaagcg
ggctttctgcgactgaatgagaccgccaaacgggaagggagcaaagtcttcgccaatccg
cgcaacgccgccgccggctccttacgccagctggatccctcgattaccgctaggcggccg
ctgacgttttattgctatggcgtcggcctgctggaagacggcgagttgccggagagtcat
tgggagcgcttgcagcagttcaaagcctggggggtaccggtcagcgaccgcgtccgccgc
tgcaccggtagtgcggcggtgctggatttttatcggcaggtgcacgaggcgcggttatcg
ctcgggttcgatatcgacggcgtcgtgataaaagtcgactcgctggcgctgcagcagcgt
ctgggctttgtcgcccgcgcgccgcgctgggctatcgcctataaatttccagcccaggag
cagttgacccgggtacgcgacgtagagtttcaggtgggaaggaccggcgcaatcacgccg
gtcgcgcgccttgagccagtactggtttccggcgccatggtcagtaacgccaccctgcac
aacgctgatgaggtcgagcggctggggctgatgattggcgatacggtcattgtgcgtcgc
gccggcgatgtcatcccgcagattgtcggcgtcgtcacgtccgaacggccggctgaggtg
cgcccggtagcgtttccgacgcaatgcccggtttgcagctcggacgtcgagcgggtggaa
ggcgaggcggtgttgcgttgcaccgcgggcttagtttgcgccgcacagcgcaaggaagcg
ctaaagcatttcgtttcccgccgggcgatggacatcgacggtatgggcgataagatcatt
gatcagctggtggagcgggagctggtgaaaaccccggccgacctgttccggctaaataaa
gaaatcctgacgcggctggatcggatggggtcgaaatcggcgcaaaatttgctggaggcg
ctggaaaaagcccggcagaccacctttgcgcgctttctgtacgcgcttgggatccgcgag
gtgggcgaggccacggccgtcaatctggctgccgcttacggcacgctcgacgcgctgatt
gccgccgatatcgattcgctgacgggcgtgcaggatattggcaacattgtcgcgacccac
gtgcgccacttttttgaggaaacgcataatatcgaagtgatccaggatttgttgagcccg
gcaatcggtattcgatggcctgagcctgtggcagcgcccgtcgcggcgagcgataatccc
ttcgctgggaaaaccattgtcctgaccggatcgctaagcagcctgtcgcgggatgaggcc
aaggatcatctggtcgcgctcggcgcgcgggtcagcggcagcgtttccgccaaaaccgat
ctgctcatcgcgggggaggcggcggggtccaaattgtccaaggcacagcagttgaatatt
ccggtgatggatgaggcggaaatgatgcgtcttcttggagaatcttcggacgcataa
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