Shewanella glacialimarina: FJ709_07280
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Entry
FJ709_07280 CDS
T07885
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgla
Shewanella glacialimarina
Pathway
sgla03030
DNA replication
sgla03410
Base excision repair
sgla03420
Nucleotide excision repair
sgla03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgla00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FJ709_07280 (ligA)
03410 Base excision repair
FJ709_07280 (ligA)
03420 Nucleotide excision repair
FJ709_07280 (ligA)
03430 Mismatch repair
FJ709_07280 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgla03032
]
FJ709_07280 (ligA)
03400 DNA repair and recombination proteins [BR:
sgla03400
]
FJ709_07280 (ligA)
Enzymes [BR:
sgla01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FJ709_07280 (ligA)
DNA replication proteins [BR:
sgla03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FJ709_07280 (ligA)
DNA repair and recombination proteins [BR:
sgla03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FJ709_07280 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FJ709_07280 (ligA)
MMR (mismatch excision repair)
DNA ligase
FJ709_07280 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FJ709_07280 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
UCX04318
LinkDB
All DBs
Position
1691887..1693893
Genome browser
AA seq
668 aa
AA seq
DB search
MQEIQTEIAQLSQALNQHNINYYVDDAPTIPDAEYDRLMQRLIQLERDFPQFKSSESPSQ
RVGGLALAKFDQITHLKPMLSLDNAFEQADFEAFNKRITDKVGQLEYVCEPKLDGLAVSI
TYRHGVLERAATRGDGAVGEDITENVRTIKSIPLKLRGEGYPELVEVRGEVFMPKAAFDA
LNQRQMAKDEKAFVNPRNAAAGSLRQLDSKITASRALGFYAYALGVVEGESLPMAQSHFG
QLMQLKVWGLPVSAEVKVCNDLDKVYAYYQDILTRRSALAFEIDGVVIKVNSIPQQLDLG
FVAKAPRWAIAYKFPAQEEMTVLEAVDFQVGRTGAITPVARLQPVFVGGVTVSNATLHNA
DEIARLGVKIGDTVIIRRAGDVIPKVVAVVLEQRADSATDIVFPLCCPICQSDVERIEGE
AVTRCTGGLFCEAQRKEAIKHFASRKALNIDGMGDKIVEQLIDKELVKSPADLFGLSASA
ITMLDRMAMKSATKLVAAIKDAKSTTLARFLYSLGIREVGEATAANLAAHFKTIEAIRIA
SIEQLLDVDDVGQIVAQHISHFFAQEHNLEVVSKLLESGISWPPIEQADESGLSLKGQTW
VITGTLTQLNRNDAKAQLQALGAKVAGSVSKNTDCLVAGEAAGSKLAKAQELGVKVIDED
SLIAILQA
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaattcaaactgaaatcgctcaattatctcaagccttaaatcaacataatatc
aattactatgtagatgatgcacctactattcctgatgctgaatacgaccgcttaatgcag
cgtttaattcaacttgagcgagacttcccacagtttaaatcttctgaatcaccgagccag
cgagtgggtggtttagcgttagcaaagtttgatcagatcacccatttaaaacctatgcta
agtttagataatgcatttgaacaggctgattttgaagcatttaacaagcgtattactgat
aaagtcgggcagctggagtatgtgtgtgagcctaaattagatggtttagcggtatcgatt
acttatcgtcatggcgtacttgaacgtgcagcaacccgcggtgatggcgctgttggtgaa
gatattactgaaaacgtgcgcactattaagtcaatcccattaaaactgcggggtgaaggt
taccctgaattagttgaggtgcgcggtgaagtgtttatgcccaaagccgcctttgacgct
ttaaaccaacgtcaaatggcgaaagatgaaaaagcttttgttaatccccgcaatgccgcc
gccggcagtttacgccagcttgatagtaaaattactgcttcacgggcgctggggttttat
gcttacgctttgggtgtggttgagggtgaatcactgcctatggcacaaagccattttggt
cagttaatgcaacttaaagtttggggcttgccagttagcgctgaagttaaagtgtgtaat
gatttagataaagtttatgcctattaccaggatattttaacccgtagaagcgcacttgcc
tttgaaattgatggggtggtgattaaagttaattcgattccgcaacagcttgatttaggt
tttgtggctaaagcgccacgttgggctatagcctataaatttcctgctcaagaagaaatg
acagtattagaggcggttgattttcaagttggccgcacgggtgctattaccccagttgct
cgattacagccagtttttgttggtggcgtgacagtatcaaatgccacattacataatgcc
gatgaaatagcccgtcttggggtgaaaattggcgataccgtgattattcgacgtgcggga
gatgtgatccctaaagtcgtcgctgtggtgttagaacagcgtgccgacagtgccacggat
attgtttttccgctatgttgccctatttgtcaaagcgatgttgaacgtattgagggtgag
gctgttactcgttgtactggtggattattttgtgaagcacagcgcaaagaagcgattaag
catttcgcctcacgtaaagcattaaatattgatggtatgggcgataaaattgtcgagcaa
ctgattgacaaagaactggtaaaaagtcccgcggacttattcggtttatctgcgtcagcg
ataactatgcttgatcgcatggcaatgaaatcagccacaaaattagtcgcagcaattaaa
gatgctaaatcaacgaccttagcgcgctttttatatagcttgggtatccgtgaagttggc
gaggcgactgcagcaaatctagcggcacattttaaaactattgaggcaattcgtattgct
tcaattgaacagctattagacgttgatgatgttggccaaattgttgctcaacatatcagc
catttcttcgcccaggagcataatttagaggtggttagtaaattgctcgaaagcggtatt
agctggccacccatcgagcaagcagatgaaagtggattaagtttaaaaggtcaaacctgg
gtaataacaggtaccttaacccaattgaatcgcaatgacgctaaagcacaactacaggcg
ttaggtgccaaagttgcaggtagtgtgtcaaaaaataccgattgtctagtggcgggagag
gcagcaggctctaaactcgctaaagcacaagagttaggtgtaaaagtgattgatgaagat
agtttaatcgctattctacaggcttaa
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