Streptomyces glycanivorans: P8A20_04610
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Entry
P8A20_04610 CDS
T10510
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgly Streptomyces glycanivorans
Pathway
sgly03030
DNA replication
sgly03410
Base excision repair
sgly03420
Nucleotide excision repair
sgly03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgly00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
P8A20_04610 (ligA)
03410 Base excision repair
P8A20_04610 (ligA)
03420 Nucleotide excision repair
P8A20_04610 (ligA)
03430 Mismatch repair
P8A20_04610 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgly03032
]
P8A20_04610 (ligA)
03400 DNA repair and recombination proteins [BR:
sgly03400
]
P8A20_04610 (ligA)
Enzymes [BR:
sgly01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
P8A20_04610 (ligA)
DNA replication proteins [BR:
sgly03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
P8A20_04610 (ligA)
DNA repair and recombination proteins [BR:
sgly03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
P8A20_04610 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
P8A20_04610 (ligA)
MMR (mismatch excision repair)
DNA ligase
P8A20_04610 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
P8A20_04610 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
PTCB-BRCT
HHH
Cas_Csd1
DNA_ligase_ZBD
Nlig-Ia
UPF0758_N
DUF7575
Nckap1
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
WLQ62917
UniProt:
A0ABY9J504
LinkDB
All DBs
Position
complement(1028498..1030594)
Genome browser
AA seq
698 aa
AA seq
DB search
MTTNTAGPLADTAAYAAAVEEAERAAAAYYTAGESALDDDAYDRLVRAIAAYEEEHPQEV
LDASPTGKVAGGAASGDVPHTVPMLSLDNVFSAEQFVTWTASVERRIGRPVAAWSVEPKL
DGLAVAARYRLGRLEQLITRGDGTAGEDVSHAIGTVLGLPERLGAPATLEIRGEILMTNE
QFETANTVRTEHGAAPFANPRNGAAGTLRAKDRPYRVEMTFFAYGALALPDSGELTDTLA
ELPHSEVLEYVAGIGVHTAADTAVAPRTVTTVEEVQAGVEDIASLRASLPFGIDGIVIKA
DLAADQRDAGSGTRAPRWAIAYKLPAVEKVTRLLGVEWNVGRTGIIAPRAVLEPVEIDGS
TVSYATLHNPADITRRDLRLGDHVMVYKAGDIIPRIEAPVAHLRTGEEQPIEFPEACPRC
GSEIDASEQRWRCTRGRDCRLVASISYAAGRDQLDIEGLGATRVVQLVDAGLVQDFADLF
TLEREQLLSLERMGETSTDNLLAAIRTAASRPLSRVFCALGVRGTGRSMSRRIARHFASM
DRIVAADADALQQVDGIGTEKAAAVVRELEELAPLIAKLVAAGVNMTEPGATPPPEPGAA
QEGDAEDSATTGLPLAGMTVVVTGAMTGALEKLSRNEMNELIERAGGKSSSSVSKRTSLL
VAGEKAGSKRTKAEDLGVRIAAPEEFAELVEAYLAVEV
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgaacacagctggtccgctcgccgacaccgccgcctacgcagctgcggtggaa
gaggccgagcgcgccgcagccgcgtactacaccgcaggtgagagcgcgctcgacgacgat
gcgtacgaccggctggtgcgggcgatcgcggcctacgaggaggagcacccgcaggaggtg
ctggacgcctcgccgacggggaaggtcgccggcggcgcggcctcgggggacgtgccgcac
accgtgccgatgctctcgctcgacaacgtgttctccgccgagcagttcgtcacctggacc
gcttccgtcgagcggcgtatcggccggcccgtcgcggcctggagcgtggagcccaagctc
gacggtctggccgtggccgcgcgctaccgcctgggccggctcgagcagttgatcacccgg
ggcgacgggacggccggcgaggacgtctcccacgcgatcgggacggtgctcggcctgccc
gagcggctgggcgctcccgccacgctggagatacgcggcgagatcctcatgaccaacgag
cagttcgagacggcgaacacggtgcgcacggagcacggcgccgcccccttcgccaacccg
cgcaacggcgcggccggcaccctgcgcgccaaggaccgcccctaccgcgtggagatgacc
ttcttcgcgtacggcgcgctcgcgctgccggattccggcgaactgacggacaccctggcc
gaactcccgcacagcgaggtcctggagtacgtcgcagggatcggcgtgcacaccgccgcg
gacaccgcggtcgccccgcgcaccgtgaccacggtcgaggaggtccaggcgggggtggag
gacatcgcctcgctgcgcgcctcgctgcccttcggtatcgacggcatcgtgatcaaggcg
gacctggcggccgaccagcgtgacgcgggctccgggacgcgcgcgccgcgctgggccatc
gcgtacaagctcccggccgtggagaaggtcacccggcttctgggggtcgagtggaatgtc
ggcaggaccggcatcatcgcgccgcgcgccgtgctggagcccgtcgagatcgacgggtcg
accgtcagctacgccacgctgcacaaccccgccgacatcacgcgccgggacctgcgcctg
ggcgatcacgtgatggtctacaaggcgggcgacatcatcccccgcatcgaagcgcccgtg
gcgcacctgcggacgggcgaggaacagccgatcgagttccccgaggcatgtccccggtgc
ggttccgagatcgatgcgagcgagcagcgctggcgctgcacccggggccgtgactgtcgc
ctggtcgcctccatctcctacgcggcaggccgtgaccagctggacatcgaggggctcggc
gccacgcgcgtcgtccagctcgtcgacgccggcctcgtccaggacttcgccgatctcttc
acgctggagcgcgaacagctgctctcgctggagaggatgggggagacctcgaccgacaac
ctgctcgcggccatccggaccgccgcgagccgtcccctgtcgagggtcttctgtgcgctc
ggcgtgcgtggcacggggcgttccatgtcccgccggatcgcccgccacttcgcctcgatg
gaccggatcgtcgccgccgacgccgacgcgctgcagcaggtcgacggcatcgggacggag
aaggcggccgcggtcgtcagggaactggaggagctcgctccgctgatcgccaagctggtg
gccgccggggtcaacatgacggagcccggtgccactccgccgccggagcccggggccgcg
caggagggcgacgccgaggactccgcgacgaccgggctgccgctcgccggcatgacggtc
gtggtcaccggagccatgaccggggccctggagaagctctcgcgcaacgagatgaacgag
ctgatcgagcgggccggagggaagtcctcctccagcgtctccaagcgcacgagtctgctc
gtcgccggggagaaggcgggatccaagcggaccaaggccgaggatctcggagtgcggata
gcggcgcccgaggaattcgccgagctcgtcgaggcgtatctcgctgtggaggtgtga
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