Streptomyces aurantiacus: GCM10017557_23840
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Entry
GCM10017557_23840 CDS
T07085
Symbol
ligA1
Name
(GenBank) DNA ligase 1
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgm
Streptomyces aurantiacus
Pathway
sgm03030
DNA replication
sgm03410
Base excision repair
sgm03420
Nucleotide excision repair
sgm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GCM10017557_23840 (ligA1)
03410 Base excision repair
GCM10017557_23840 (ligA1)
03420 Nucleotide excision repair
GCM10017557_23840 (ligA1)
03430 Mismatch repair
GCM10017557_23840 (ligA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgm03032
]
GCM10017557_23840 (ligA1)
03400 DNA repair and recombination proteins [BR:
sgm03400
]
GCM10017557_23840 (ligA1)
Enzymes [BR:
sgm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GCM10017557_23840 (ligA1)
DNA replication proteins [BR:
sgm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GCM10017557_23840 (ligA1)
DNA repair and recombination proteins [BR:
sgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GCM10017557_23840 (ligA1)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GCM10017557_23840 (ligA1)
MMR (mismatch excision repair)
DNA ligase
GCM10017557_23840 (ligA1)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GCM10017557_23840 (ligA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
BCL27525
UniProt:
A0A7G1P369
LinkDB
All DBs
Position
complement(2873641..2875866)
Genome browser
AA seq
741 aa
AA seq
DB search
MAGDNDAQTAPAAAAAAGPAPSEAREKHAQLAEQIEEHRFRYYRKDAPVVSDADFDKLLR
TLEALEDEYPELRTPDSPTQKVSGADAADFTTFTAVQHRERMLSLDNAFDDEELAAWADR
VAKEVGTSAYHFLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDR
LHGERIPDLVEIRGEVYFPMEKFQELNARLVEAGDKPFANPRNAAAGSLRQKDSRVTATR
PLHMVVHGIGAREGFDIDCLSHAYGLLREWGLPTTRYGEVVEGLDGVREFIARYGENRHS
VEHEIDGVVVKLDEIPLQGRLGSTSRAPRWAIAWKYAPEEVNTKLINIRVGVGRTGRVTP
YAQVEPVTVAGSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVVDLRDGSE
REFEMPAECPECGTPLAPAKEGDIDLRCPNGRTCPAQLRERLFYLGGRKSLDIENFGYVA
AAALTKPLEPSEPPLGDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFA
NQEGAPRKNAVAMLENIAAAKERPLARIITGLSIRHVGPVAAEALAREFRSIDRIEQATE
EELAAVEGVGPTIAASLKQWFTVDWHQEILRKWKAAGVRMEEESSGEDEGPRPLEGLTVV
VTGTLDRHTRDGAKEALQSRGAKVTGAVSKKTSFVVVGDNPGSKFDKAMQLKVPVLNEDG
FAVLLEQGPEAAAEVALPAEE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaacgacgcacagaccgccccggccgctgcggcggctgcggggcccgcg
cccagcgaggcacgggagaagcacgcgcagctcgccgagcagatcgaggagcaccgcttc
cggtactacaggaaggacgcgccggtcgtcagcgacgcggacttcgacaagctcctgcgc
acgctggaggccctggaggacgagtatcccgagctgcgcaccccggactcgccgacccag
aaggtctcgggggcggacgcggctgatttcacgaccttcacggccgtccagcaccgcgag
cgcatgctctccctggacaacgccttcgacgacgaggagctggccgcctgggccgaccgc
gtcgccaaggaggtcggcacgtccgcgtaccacttcctgtgcgagctgaaggtcgacggc
ctcgcggtcaacctcacctacgagcacgggcgcctcacacgcgcggcgacccgcggcgac
ggccgcacgggcgaggacatcacgcccaacgtccgcacgatcgcggagatcccggaccgt
ctccacggcgagcgcatccccgacctcgtggagatccgcggcgaggtctacttcccgatg
gagaagttccaggagctcaacgcccgcctggtggaggccggcgacaagcccttcgccaac
ccgcgcaacgcggcggcgggttcactgcgccagaaggactcccgcgtcacggcgacccgc
ccgctgcacatggtcgtgcacggcatcggcgcgcgggagggcttcgacatcgactgcctc
tcgcacgcgtacgggctgctgcgcgagtggggcctgccgacgacccgctacggggaggtc
gtcgaaggactcgacggggtgcgggagttcatcgcccgctacggagagaaccgccactcc
gtggagcacgagatcgacggcgtcgtcgtcaagctcgacgagatccccctccagggccgc
ctcggctcgacctcccgcgcgccccgctgggcgatcgcgtggaagtacgcgccggaggag
gtcaacaccaagctgatcaacatccgggtgggcgtgggccgtacgggccgtgtgactccg
tacgcgcaggtggagcccgtcacggtggccggctccgaggtcgagttcgcgacgctgcac
aaccaggacgtggtcaaggccaagggcgtcctcatcggcgacacggtggtgctgcgcaag
gccggcgacgtcatcccggagatcctcggaccggtcgtcgacctgcgcgacggcagcgag
cgggagttcgagatgcccgccgagtgccccgagtgcggcacaccgctggcgcccgccaag
gagggggacatcgacctgcgctgtcccaacggccgcacctgccccgcccagttgcgcgag
cgcctcttctacctcgggggccgcaagtccctggacatcgagaacttcggatacgtggcc
gccgccgcgctcaccaagcccctggagccgtccgagccgcccctgggggacgagggcgac
ctcttcgacctcaccatcgagcgcctgctgcccatcaaggcgtacgtcctcgaccaggac
agcggactccccaagcgcgacccgaagacgggcgaggagaagatcgccacggtcttcgcc
aaccaggagggcgcccccaggaagaacgcggtcgcgatgctggagaacatcgccgcggcc
aaggagcgcccgctggcccgcatcatcaccggcctgtccatccgtcacgtgggcccggtc
gcggccgaggcactggcccgtgagttccgctcgatcgaccgcatcgagcaggccacggag
gaggaactcgccgccgtcgagggcgtcgggcccaccatcgccgcctcgctgaagcagtgg
ttcacggtggactggcaccaggagatcctgcgcaagtggaaggccgccggcgtccgcatg
gaggaggagagctccggcgaggacgaggggccccgcccgctcgaagggctcaccgtcgtc
gtgaccggcactttggaccgtcacacccgcgacggggcgaaggaggcactgcagagcagg
ggcgcgaaagtgaccggtgctgtttcgaagaagacgtcttttgttgttgtgggtgacaat
cctggttcgaagttcgacaaggccatgcagctcaaggtgcccgttctgaacgaagatggt
ttcgccgtgctgctcgaacaaggaccggaagcagcggccgaagtcgcgcttccggccgag
gagtag
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integrated database retrieval system
