Saprospira grandis: SGRA_3356
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Entry
SGRA_3356 CDS
T01764
Symbol
ligA
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgn
Saprospira grandis
Pathway
sgn03030
DNA replication
sgn03410
Base excision repair
sgn03420
Nucleotide excision repair
sgn03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGRA_3356 (ligA)
03410 Base excision repair
SGRA_3356 (ligA)
03420 Nucleotide excision repair
SGRA_3356 (ligA)
03430 Mismatch repair
SGRA_3356 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgn03032
]
SGRA_3356 (ligA)
03400 DNA repair and recombination proteins [BR:
sgn03400
]
SGRA_3356 (ligA)
Enzymes [BR:
sgn01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SGRA_3356 (ligA)
DNA replication proteins [BR:
sgn03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SGRA_3356 (ligA)
DNA repair and recombination proteins [BR:
sgn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SGRA_3356 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SGRA_3356 (ligA)
MMR (mismatch excision repair)
DNA ligase
SGRA_3356 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SGRA_3356 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
Motif
Other DBs
NCBI-ProteinID:
AFC26083
UniProt:
H6L147
LinkDB
All DBs
Position
3466043..3468175
Genome browser
AA seq
710 aa
AA seq
DB search
MRYSAQEQKELFERSKALLAQKPLPTEEAVIQELIALITYHEWRYYVLDQPLLSDYEYDQ
LFRELKRLEEAAPQWVFPHSPTQRVSSDLTEGFLTVEHLTPTLSLENSENMEDLQDFEQR
LRRLLPEDLAQNELAYCVEPKFDGGTIVLVYENDQLVRAATRGNGEKGDEITANARAIAS
IPLQANFSKYGIQKVELRGEALIRKDRFERVNEKRAAAGEALFANPRNAATGCLRLKDPQ
QVKARSLEAFVYQMGFAVNAEAENVLDQFESHWDILACLADLGFKVPTADKERALCPNIA
AVGDFCAQWEAQREDYAYEIDGMVVKLNNLALQEICGYTNHHPRWAIAYKFTAKEASSVL
ETVEYQVGRTGAITPVAKIRPVELAGVTVSSVSLHNAEQIAEKDLRIGDHVLVKRAGDVI
PQIVKPLEDLRTGEEQPIVFPSNCPVCDSLLERPEGEAVWRCINPDCEAQILERIKHFVS
KGAMDISGFGAAYVEKFYEEGLLHGLADVYRLDYEKIAQFEGFGQRSVAKLQEAIEASKN
QPIFRLIYALGLRHVGSGNAKILAAVVSDIRELKNWSIEQLSELKDVGPKMAQSVYDSFQ
LPAIQQLLEELGELGLNLKQLEEEKPQEGPKEGPFANKKVLFTGSLQEMSRSEAKKRLLA
AGGIAASSVSKNLDFLVVGEKAGSKLKKAQDLGINILTEAEFLAQLDGQS
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
atgcgttactctgctcaagagcaaaaagaattatttgagcgctctaaagcgctcttggcc
caaaagccattgcctacagaagaggctgttattcaggagctaattgccctgattacttat
catgaatggcgctattatgtgctcgatcagcccctgctgagtgattatgaatatgatcag
ttatttcgagaattgaagcgcttggaagaggcggccccccaatgggtttttccgcattcg
cccacgcaaagagtgtctagcgacctgacagagggctttctgacggtggagcatctgacg
cctacgctttctttggagaactctgaaaatatggaggatcttcaggattttgagcagcgt
cttcgccgtcttttacccgaagatttggcccaaaatgaactggcctattgtgtagaaccc
aagtttgatgggggaacaattgtgttggtttatgaaaatgatcagttggtccgtgccgcc
actcgcggaaatggagaaaaaggcgatgaaatcacggccaatgcccgcgccattgctagc
attcccttacaggccaattttagtaaatacggcatccaaaaagtggaactgcgcggagag
gccctgatccgaaaagatcgttttgagcgggtcaatgaaaagcgtgccgccgctggagag
gccctttttgccaaccccagaaatgctgcaacgggctgccttcgcctaaaagatccacag
caagtaaaagcccgatcattagaggcttttgtctatcaaatgggctttgcggttaatgcc
gaagccgaaaatgttttggaccaatttgagagccattgggatattttggcttgtttggcc
gacctaggttttaaggtcccaacagccgataaagagcgggcgctttgccccaatattgcc
gccgtaggcgatttttgcgcccaatgggaggcccaaagagaagattatgcctatgaaatt
gatggcatggtggtcaagctgaataacttggccctacaagaaatttgcggctacaccaat
catcatccccgttgggcgattgcctataaatttacggccaaagaggccagttctgtcctc
gaaaccgtagagtatcaggtgggccgaacgggggctattacgcccgtggccaaaattcgc
cctgtcgagttggctggggtgaccgtgagctcggtttctctacataatgccgagcaaatt
gccgaaaaagatttgcgcattggcgatcatgtgctggtcaaaagagcgggagatgtgatt
ccccaaatcgttaaacccctagaagatttgcggacaggggaggagcagcctattgttttt
ccaagcaattgtcccgtttgcgattctttgctggaacgtcctgagggcgaagccgtttgg
cgctgtatcaaccccgattgtgaggcccaaatcctagagcgcatcaagcattttgtctct
aagggagccatggatatttctggttttggcgccgcttatgtcgagaagttttatgaggag
ggcctgctgcatggcctagccgatgtttaccgcctagattatgaaaaaattgctcagttc
gagggctttggccagcgctctgtcgccaaattgcaagaggcgattgaggcctcgaaaaac
caaccgattttccgcctcatttatgcccttggcctgcggcatgtcggttcgggcaatgcc
aaaattttggcggctgtggtctccgatatccgagaactcaaaaattggagcatcgagcag
ctcagcgagttaaaggatgtgggcccaaaaatggcccagtcggtctatgatagctttcaa
ttgccagccatccaacagttattggaggagctaggcgaattgggcctcaacctcaaacaa
ttagaagaagaaaaaccccaagagggccccaaagaaggcccctttgccaataaaaaggtc
ctgtttacgggcagtttgcaagagatgagccgctcggaagccaaaaaacgcctgctggcc
gctgggggcattgccgcctcttcggtctccaaaaatctagactttttggtggtgggcgaa
aaagcaggctctaaactcaaaaaagcccaagatttgggcatcaatatccttacagaagca
gaatttttagcccaactagacgggcagtcgtaa
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