Scandinavium goeteborgense: A8O29_001030
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Entry
A8O29_001030 CDS
T06630
Symbol
ligB
Name
(GenBank) NAD-dependent DNA ligase LigB
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgoe
Scandinavium goeteborgense
Pathway
sgoe03030
DNA replication
sgoe03410
Base excision repair
sgoe03420
Nucleotide excision repair
sgoe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgoe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
A8O29_001030 (ligB)
03410 Base excision repair
A8O29_001030 (ligB)
03420 Nucleotide excision repair
A8O29_001030 (ligB)
03430 Mismatch repair
A8O29_001030 (ligB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgoe03032
]
A8O29_001030 (ligB)
03400 DNA repair and recombination proteins [BR:
sgoe03400
]
A8O29_001030 (ligB)
Enzymes [BR:
sgoe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
A8O29_001030 (ligB)
DNA replication proteins [BR:
sgoe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
A8O29_001030 (ligB)
DNA repair and recombination proteins [BR:
sgoe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
A8O29_001030 (ligB)
NER (nucleotide excision repair)
GGR (global genome repair) factors
A8O29_001030 (ligB)
MMR (mismatch excision repair)
DNA ligase
A8O29_001030 (ligB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
A8O29_001030 (ligB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
RNA_ligase
DUF3701
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QKN79934
LinkDB
All DBs
Position
59686..61365
Genome browser
AA seq
559 aa
AA seq
DB search
MTGIRGILAVLLTALTLSAQAVCPAWSDARAIQEIDRLQRQIDEWNDAYWQSGGSGISDD
KFDQLSAELQQWRRCFGNPVEEPALPALKGEQAHPVAHTGVKKMKDSLAVSHWMHGKTDL
WAQPKVDGVAMTLVYRKGTLVQVISRGNGRAGEDWTNKALQIPAIPKTLQGRLANSVLQG
ELFLRQEGHIQQQMGGMNARSKVAGAMLRKADSKLLNELSVFIWAWPDGPAHMSERLTLL
REAGFSLVGDYSRPVKVISDVTTLRQHWFTTPLPFATDGVVVRAAKEPESRNWLPGEGNW
VIAWKYPPATRIAEVKSIEFSVGRTGKVAVVAHLVPVLLDDKQVRRVNVGSLKRWQDWDI
APGDRLNISLAGQGIPRVDDVAWRTTDRTKPLPPEGTFDSLSCYWNSVQCQPQFLARLLW
VSQQLHLDSVGESLWRQLNESHHFAHLFSWLTLSETQLQQTPGFSADRARQVWHKFDLAK
QQPFTQWLQAMGMPLNQKALSSLAGFTWQQLEQMKEEEWQTLPMTGKTKASQLMRWLDDS
HVNELAQWLAEQGIAGFKD
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgacagggataagagggattttagcggtgctgctgacagcgttaacgttgagtgcgcag
gccgtttgtccggcgtggtcggatgccagagcgatacaagaaattgaccgtctgcaacgg
cagatagatgaatggaatgacgcttattggcaatccgggggcagcgggataagcgatgac
aaattcgatcagcttagcgcggagttacagcagtggcggcgctgttttggcaatcccgtt
gaggagcctgcactcccggccctaaagggggaacaggcgcatccggtggctcatactggc
gtaaaaaagatgaaagacagtctggcggtatcccattggatgcatggcaaaacagacctg
tgggcccaacccaaagtcgatggcgtggcgatgacgctggtctatcgcaaaggcacactc
gtgcaggttatcagccggggcaatggccgggcgggcgaagactggaccaataaagcgctt
caaatccccgctatccccaaaacgctacaaggccgccttgcaaacagtgtcctgcaaggg
gaactgtttcttcggcaagaagggcatattcagcagcaaatggggggtatgaatgcccgg
tcaaaagtcgctggcgctatgttgcgtaaagcggattcaaaattgctcaatgaattatct
gtgtttatctgggcctggccggatggaccggcacacatgtcggagcggctgacgttacta
cgcgaagccggattttcactggtcggggattattcacgaccggtcaaggtgatttcggat
gtcacaacgcttcgccaacactggtttaccacgccgttgccttttgccaccgatggcgtt
gtggtccgcgcggcaaaagaacccgaatctcgaaattggttgcccggagagggcaactgg
gtcatcgcgtggaaatatcccccagcgacgagaattgccgaagtgaaatcgattgagttc
agcgtgggccgcaccggaaaggtggccgttgtggcgcatctggttcctgtcctgcttgat
gacaaacaggttcggcgggtcaatgttggctcgttaaaacgctggcaagattgggatatt
gcgccaggcgatcgactgaatatcagccttgccgggcaagggatcccgagagttgatgat
gtggcctggcgaacaaccgacaggaccaaaccattgccgccagaaggcacctttgattct
ctatcctgctattggaattcagtgcagtgccaaccgcagtttttggcgcggttactatgg
gttagccagcaactgcacctcgacagcgtgggggaatcgctctggcggcagctcaatgag
agtcaccatttcgcacatctcttttcctggttaacgctgagcgaaacacagctccagcaa
actccgggattctctgcggacagagcccgccaggtgtggcacaagtttgacctcgcgaag
cagcagccttttactcaatggctacaggcgatgggaatgccgctgaatcaaaaggcattg
tcgagccttgcaggattcacctggcagcagcttgaacaaatgaaagaagaggagtggcag
acgttgcctatgaccggaaaaacaaaagccagccagctgatgcgctggctggatgactcg
catgtgaacgagctggctcagtggcttgcggagcaggggattgcagggtttaaggattaa
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