Sporisorium graminicola: EX895_005829
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Entry
EX895_005829 CDS
T09331
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
sgra
Sporisorium graminicola
Pathway
sgra03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
sgra00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EX895_005829
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
sgra03019
]
EX895_005829
Messenger RNA biogenesis [BR:
sgra03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EX895_005829
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Lysine_decarbox
ABC_tran
LDcluster4
AAA_21
AAA_25
AAA_29
AAA_28
RsgA_GTPase
nSTAND3
FtsK_SpoIIIE
MMR_HSR1
AAA_16
AAA_15
AAA_22
Arf
AAA_23
Motif
Other DBs
NCBI-GeneID:
40728724
NCBI-ProteinID:
XP_029736734
UniProt:
A0A4V6ET19
LinkDB
All DBs
Position
SGRAM_8:complement(145233..146900)
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AA seq
555 aa
AA seq
DB search
MSGYTDSICVFCGSSPGSKPEYMAAAASVGHAIAKHNYRLVYGGGSRGCMSGVSQAVFEA
GGHVLGVIPQVMATTVPSGHPGHKSGGATVVSKEGTGPTVHNPDAGSGLAETVVVQSMHE
RKQRMAAESNLGFIGLPGGYGTFEEVMEMVTWTQLGIHRKPMVLLNVNGFYTPMKQQIDL
AVEEGFISKAGQQLISVVDCDASNIAACGDAVLAEAVRLAKEVSSSGSGYWDWNKPQGPV
STAEGGVIDDAANKPLQLADGEQLAVEVSNLTFSFNPDIPPSLERCNLHLKRGSRCLLIG
ANGAGKSTLLRLLAGKKLCDSKVRVFGKDVFRDSPSGVTYLGTEWAMNPVVRSDIVVSTF
LDSVGGYRHKARRDRLLDILDVDLTWHMHAISDGERRRVQLCMGLMEPWDLLLLDEVTVD
LDVQVRADLLDFLQQETEERGATIIYATHIFDGLQSFPTHLAHMRLGTTTTTLPIDWPAT
NPADIAALPPTASADKDRDLSPLLNVSLAWLREDKVVRAEEESKRGRTRGANRKNETTDS
EKFFSKYDYSQTVTR
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgagcggctacaccgactcgatatgcgtgttctgcggctcttcgcccggaagcaagccc
gaatacatggcggcggcggccagcgtcggccatgccatcgccaagcacaactatcgtcta
gtctacggcggtggctcccgcggatgcatgagcggcgtctctcaggccgtgttcgaagcg
ggtggacatgtcctcggtgtcatccctcaagtcatggccaccaccgttccctctggtcac
cctggtcacaagtccggtggagcgactgtcgtgtccaaggaaggcaccggtcctaccgtc
cacaacccggacgccggctcaggtctagccgagaccgtggtggtgcagtccatgcacgag
aggaagcagcgtatggctgcggagagtaacttgggcttcatcggccttccaggtgggtac
ggcacgtttgaagaggtcatggagatggtcacttggacgcagctgggcattcaccgcaag
cccatggtgctactcaacgtcaacggcttctacactcctatgaagcagcagatcgatctg
gctgttgaagagggctttatctccaaggctgggcagcagctcatcagtgtggtggactgc
gacgcttccaacattgctgcgtgcggtgacgctgtgctcgccgaggctgtgcgtctcgcc
aaagaggtttcttccagcggatccggctactgggactggaacaagccgcaaggacccgtc
agcactgccgaaggtggcgtcatcgacgacgctgccaacaaacctctccagctcgccgat
ggtgaacaactggcggtggaagtgtccaaccttacgtttagcttcaacccggacatcccc
ccttctctcgaacgctgcaatctgcacctcaagcgcggctcgcgctgtctattgattggt
gccaacggtgcaggcaaatcgacgctgttgcgcttgcttgctggaaagaagctgtgcgac
tcgaaggtgcgcgtattcggtaaggatgtgttccgcgactctccctcgggcgtcacgtat
ctcggcaccgagtgggcgatgaatcccgtggtgcgctccgacatcgtcgtttccaccttc
ctggactccgtgggaggctaccgtcacaaggcgcgtcgcgatcgtctgctcgatattttg
gatgttgacctcacgtggcacatgcatgctatctcggacggcgagcgacgacgtgtccag
ctttgcatggggttgatggagccctgggacctgctgttgctcgacgaagtgactgtggat
ctcgatgtgcaagtccgtgcggatctgctcgactttttgcagcaagagacggaggagagg
ggcgcgacgatcatctacgctacacacatctttgatgggcttcagagcttcccgacgcac
ttggcgcacatgcggctgggcaccacgacgacgacgctccccatcgattggcccgcgacc
aatccggccgacatcgctgctctgcctccgacggcaagtgcggataaggacagggacctg
tcacccctgctcaatgtctccttggcttggctgagggaggacaaggtagtcagggcggag
gaggagtccaaacgtggaaggaccagaggtgcgaacagaaaaaacgagacgaccgactcg
gagaagtttttcagcaagtacgattactcacagactgttactcgttaa
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