Streptomyces graminofaciens: SGFS_040500
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Entry
SGFS_040500 CDS
T09325
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgrf
Streptomyces graminofaciens
Pathway
sgrf03030
DNA replication
sgrf03410
Base excision repair
sgrf03420
Nucleotide excision repair
sgrf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgrf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SGFS_040500
03410 Base excision repair
SGFS_040500
03420 Nucleotide excision repair
SGFS_040500
03430 Mismatch repair
SGFS_040500
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgrf03032
]
SGFS_040500
03400 DNA repair and recombination proteins [BR:
sgrf03400
]
SGFS_040500
Enzymes [BR:
sgrf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SGFS_040500
DNA replication proteins [BR:
sgrf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SGFS_040500
DNA repair and recombination proteins [BR:
sgrf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SGFS_040500
NER (nucleotide excision repair)
GGR (global genome repair) factors
SGFS_040500
MMR (mismatch excision repair)
DNA ligase
SGFS_040500
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SGFS_040500
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
HHH
Zn_ribbon_TFIIB
Motif
Other DBs
NCBI-ProteinID:
BBC32756
LinkDB
All DBs
Position
complement(4663657..4665864)
Genome browser
AA seq
735 aa
AA seq
DB search
MAGDKDAQTASNASSVPAEAREKHARLAEQVEEHRFRYYVKDAPVVSDAEFDQLLRSLEA
LEEEHSELRTPDSPTQKVAGAYETEFTSVQHRERMLSLDNAFDDLELAAWAERVHKDVGA
SAYHLLCELKVDGLAVNLTYEHGRLTRAATRGDGRTGEDITPNVRTIAEIPDRLKGESVP
DVVEIRGEVYFPMEEFEKLNARLVEAGDKPFANPRNAAAGSLRQKDPRVTATRPLHMVVH
GIGALEGFQGLTRLSEAYDLLKTWGLPTARHNRVVDDLDGVREFIAYYGEHRHSVEHEID
GAVVKLDEIPLQGRLGSTSRAPRWAIAYKYAPEEVNTKLVNIRVGVGRTGRVTPYAQVEP
VTVAGSEVEFATLHNQDVVKAKGVLIGDTVVLRKAGDVIPEILGPVADLRDGSEREFVMP
AECPECGTALRPMKEGDVDLRCPNSQSCPAQLRERLFYLAGRKCLDIENFGYVAAAALTR
PLEPSEPPLIDEGDLFDLTIERLLPIKAYVLDQDSGLPKRDPKTGEEKIATVFANQEGAP
KKNAVAMLENIQAAKERPLARILTGLSIRHVGPVAAEALAREFRSIDRIEQATQEELATT
EGVGPIIAASLKEWFAVDWHKEILRKWKAAGVRMEDEHIGEDEGPRPLEGLTVVVTGTLE
RHTRDGAKEALQSRGAKVTGSVSKKTSFVVVGENPGSKFDKAMQLKVPVLNEDGFAVLLE
QGPEAAAEVALPTEE
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
gtggccggcgacaaggacgcacagactgcctcgaacgcatcatccgtacccgccgaggca
cgggagaagcacgcgcggctcgcggagcaggtcgaggagcaccgcttccggtactacgtg
aaggacgctcccgtcgtcagcgacgcggagttcgaccaactcctgcgctccctggaggcg
ctggaggaggagcattccgagctgcgtacgcccgactccccgacccagaaggtcgcgggg
gcgtacgagacggagttcacctccgtccagcaccgcgagcgcatgctctcgctcgacaac
gccttcgacgacctggagttggcggcctgggccgagcgcgtgcacaaggacgtcggcgcc
tccgcgtaccacctgctgtgcgagctgaaggtcgacggcctcgccgtcaacctcacctac
gagcacggccgtctcacgcgcgcggcgacccgcggcgacggccgcacgggcgaggacatc
acgccgaacgtccgcacgatcgcggagatccccgaccgcctgaagggcgagagcgtcccg
gacgtcgtggagatccgcggcgaggtctacttcccgatggaggagttcgagaagctcaac
gcccgcctcgtcgaggccggcgacaagcccttcgccaacccgcgcaacgcggcggccggt
tcgctccgccagaaggacccgcgcgtcaccgccacccgcccgctccacatggtggtccac
ggcatcggtgccctggagggcttccagggcctcacccgcctctccgaggcctacgacctc
ctcaagacctggggcctgcccaccgcccggcacaacagagtggtcgacgacctcgacggc
gtacgggagttcatcgcgtactacggcgagcaccgccactcggtggagcacgagatcgac
ggcgcggtggtcaagctcgacgagatcccgctccagggccgcctcggctccacctcccgc
gccccgcgctgggccatcgcgtacaagtacgcgccggaggaggtcaacaccaagctcgtc
aacatccgcgtgggcgtgggccgcacgggccgcgtcacgccgtacgcgcaggtcgagccg
gtgacggtcgcgggctcggaggtcgagttcgcgaccctgcacaaccaggacgtggtcaag
gccaagggcgtcctcatcggcgacacggtggtgctgcgcaaggccggcgacgtcatcccc
gagatcctcgggcccgtggccgacctgcgggacggcagcgagcgcgagttcgtgatgccg
gccgagtgccccgagtgcgggacggcgctgaggcccatgaaggagggcgacgtcgacctg
cgctgccccaactcccagagctgcccggcccagttgcgcgagcggctgttctacctcgcc
ggacgcaagtgcctggacatcgagaacttcggctacgtcgccgccgcagcgctcaccagg
ccgctggagccgtccgagccgccgctgatcgacgagggcgacctcttcgacctcaccatc
gagcgactgctgcccatcaaggcgtacgtcctcgaccaggacagcgggctgcccaagcgc
gacccgaagaccggcgaggagaagatcgccacggtcttcgccaaccaggagggcgcgccg
aagaagaacgcggtcgcgatgctggagaacatccaggccgccaaggagcggccgctcgcc
cgcatcctgacgggcctgtcgatccggcatgtcggaccggtggcggccgaggcgctggcg
cgcgagttccgctccatcgaccgcatcgagcaggccacccaggaggagctggccaccacg
gagggcgtcgggccgatcatcgccgcctccctcaaggagtggttcgcggtggactggcac
aaggagatcctccgcaagtggaaggccgccggcgtccgcatggaggacgagcacatcggc
gaggacgagggaccgaggccactcgaagggctcaccgtcgtcgtcacgggcacgctcgaa
cgccatacgcgggacggggcgaaggaggcactgcagagccggggcgcgaaggtgaccggt
tcggtttcgaagaagacctcattcgtcgtagtcggcgagaacccgggatcgaagttcgac
aaggcgatgcagctcaaggtgcccgttctgaacgaggacggcttcgccgtgctgctcgaa
cagggaccggaagcggccgcggaagtcgcgcttccgaccgaggagtag
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