Solicola gregarius: L0C25_01870
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Entry
L0C25_01870 CDS
T09807
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
sgrg
Solicola gregarius
Pathway
sgrg03030
DNA replication
sgrg03410
Base excision repair
sgrg03420
Nucleotide excision repair
sgrg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
sgrg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
L0C25_01870 (ligA)
03410 Base excision repair
L0C25_01870 (ligA)
03420 Nucleotide excision repair
L0C25_01870 (ligA)
03430 Mismatch repair
L0C25_01870 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
sgrg03032
]
L0C25_01870 (ligA)
03400 DNA repair and recombination proteins [BR:
sgrg03400
]
L0C25_01870 (ligA)
Enzymes [BR:
sgrg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
L0C25_01870 (ligA)
DNA replication proteins [BR:
sgrg03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
L0C25_01870 (ligA)
DNA repair and recombination proteins [BR:
sgrg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
L0C25_01870 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
L0C25_01870 (ligA)
MMR (mismatch excision repair)
DNA ligase
L0C25_01870 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
L0C25_01870 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
Nlig-Ia
HHH_8
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UYM05851
UniProt:
A0AA46TID3
LinkDB
All DBs
Position
complement(365074..367194)
Genome browser
AA seq
706 aa
AA seq
DB search
MTDETTPTPATDASASLKQRHRELTELIEDARERYYVQDSPTQSDAEYDAHLRELEELEE
QLPELRTPDSPTQTVGGFASEAFSAVEHRERMMSLDNCFSHEELEAWLARVEREVGTGSD
FLCELKVDGLAVNLTYENGRLVRAATRGDGSVGEDVTANVATIDGIPHRLRTSKEHAVPS
LVEVRGEIYFPTAAFEEFNEAWSASGKPPFSNPRNAAAGSLRQKDSSVTAQRPLRMVCHG
TGAREGFTPQRQSESYDALRAWGLPTSEHAKVLPDLAAVQEFIDHYGEHRHEVDHEIDGI
VIKVDQVSLQRRLGSTSRAPRWAIAFKYPPEEVNTKLLDVEVNVGRTGRVTPYGRMEPVR
VAGSTVEFATLHNASEVERKGVLIGDTVVLRKAGDVIPEIVGPVVDLRDGSERAFEMPTE
CPACGTTLAPSREGDADIRCPNSRTCPAQLRERLFHAAGRGAFDIEVLGWEAATALLDAG
VLEDESGLFALRETDLLEVGLFTRAAKKSEREDGAGEKVLSQNGRRLLDNLESVKSQPLW
RVLVGLSIRHVGPTAARALAGHFGDLQSIEDADLETLAAVDGVGPTIAEAVHEWFQVDWH
RRIVERWREAGVRMADERDESTPRTLEGLTIVVTGSFENYSRDQTKEAILARGGKASGSV
SKKTDYVVVGESPGSKADKAEDLGVPVLDEAAFTELLENGPPAESE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgagacgacgccgacgccggccaccgacgcctccgcgagcctcaagcagcgc
catcgcgagctcaccgagctgatcgaggacgcccgcgagcgctactacgtgcaagacagc
ccgacgcagtccgacgccgagtacgacgcgcacctgcgcgagctcgaggagctggaggag
cagcttcccgagctgcgtacccccgactcgccgacgcagaccgtcggcgggttcgcctcc
gaggcgttctccgcggtcgagcaccgcgagcggatgatgagcctcgacaactgcttcagc
cacgaggagctcgaggcctggctggcccgcgtcgagcgcgaggtcggcaccgggtcggac
ttcctgtgcgagctcaaggtggacggcctcgccgtcaacctcacgtacgagaacgggcgt
ctcgtgcgcgccgcgacgcgcggtgacggcagcgtcggcgaagacgtcaccgccaacgtc
gccaccatcgacgggatcccgcatcggctccgcacgagcaaggaacacgccgtaccgtcg
ctggtcgaggtgcgcggcgagatctacttcccgaccgctgcgttcgaggagttcaacgag
gcgtggagcgcgtccggcaagccgccgttctccaacccgcgcaacgccgccgccggttcg
ttgcggcagaaggactcatcggtcaccgcacagcgaccgttgcgcatggtctgccacggc
accggtgcgcgcgaggggttcaccccgcaacggcagtcggagtcgtacgacgcactgcgc
gcgtggggcctaccgacgagcgagcacgcgaaggtcctgccggaccttgcggcggtgcag
gagttcatcgaccactacggcgagcatcgccacgaggtcgaccacgagatcgacggcatc
gtgatcaaggtcgaccaggtcagcctgcaacgccggctcgggtcgacgtcacgggcgccg
cggtgggcgatcgcgttcaagtacccgccggaggaggtcaacaccaagctgctcgacgtc
gaggtcaacgtcgggcgtaccggccgggtgacgccgtacgggcggatggagcccgtccgc
gtcgccggctcgacggtcgagttcgccacgctgcacaatgcgtccgaggtcgagcgcaag
ggcgtactcatcggcgacacggtcgtcctgcgcaaagcgggcgatgtcatccccgagatc
gtcggcccggtcgtcgacctccgtgacggctccgagcgggcgttcgagatgccgacggag
tgccctgcatgcggtacgacgctcgcaccgtcacgcgagggcgacgccgacatccgctgt
cccaactcgcgtacctgcccggcgcagctgcgcgagcggctgttccatgccgccggtcga
ggcgccttcgatatcgaggtcctcggctgggaggcggccacggcgctgctcgacgccggc
gttctcgaggatgagagtggtctgttcgcgttgcgcgagaccgacctgctcgaggtcgga
ctgttcacccgggcggcgaagaagtccgagcgcgaggacggcgcgggcgagaaggtgctc
agccagaacggtcgccggctgctcgacaacctcgagtcggtcaagagccaaccactgtgg
cgcgtactcgtcgggctgtcgatccggcacgtggggccgacggccgcacgggcactcgcc
ggacacttcggcgacctgcagtcgatcgaggacgccgacctcgagacgctcgctgccgtc
gacggcgtcggcccgacgatcgccgaggcggtgcacgagtggttccaggtcgactggcat
cggcgcatcgtcgaacgctggcgcgaggccggcgtacgcatggcagacgagcgcgacgag
tcgacccctcgtacgctcgagggcctgacgatcgtggtcaccgggtcgttcgagaactac
tcgcgcgaccagacgaaggaggcgatcctcgcccgcgggggcaaggcgtccggctccgtg
tcgaagaagaccgactacgtggtggtgggcgagtcacccggatcgaaggcagacaaggcc
gaggacctcggcgtacccgtcctcgacgaggcggccttcaccgaactgctcgagaacggc
ccgcccgccgagagcgagtag
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